Factsheet for Zm00001d050635_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016661_P001	Maize	plastid	94.74	94.19
Zm00001d016660_P001	Maize	cytosol	94.74	94.19
EES05164	Sorghum	cytosol	94.74	94.19
TraesCS6D01G066700.1	Wheat	golgi, plastid	86.55	86.55
Os02t0121300-01	Rice	extracellular	85.38	84.88
Bra010728.1-P	Field mustard	cytosol	84.21	83.72
CDY12100	Canola	cytosol	84.21	83.72
CDX90292	Canola	cytosol	84.21	83.72
Bra011568.1-P	Field mustard	cytosol	83.63	83.63
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	73.68	83.44
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	83.63	83.14
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	83.04	82.56
CDY47469	Canola	cytosol	82.46	82.46
Bra037296.1-P	Field mustard	cytosol	82.46	82.46
CDX69094	Canola	cytosol	82.46	81.98
KRH51416	Soybean	cytosol	82.46	81.98
CDY26779	Canola	cytosol	81.87	81.87
Solyc01g111170.2.1	Tomato	extracellular, nucleus	81.29	81.29
PGSC0003DMT400004125	Potato	extracellular	81.29	81.29
KRH29120	Soybean	endoplasmic reticulum, nucleus	81.29	80.81
VIT_03s0038g01930.t01	Wine grape	cytosol	81.29	80.81
VIT_18s0001g14400.t01	Wine grape	extracellular	80.7	80.23
AT4G38740.1	Thale cress	cytosol	80.7	80.23
CDX72741	Canola	cytosol	80.12	79.65
Bra033574.1-P	Field mustard	cytosol	80.12	79.65
CDY22414	Canola	cytosol, extracellular	80.12	79.65
PGSC0003DMT400011344	Potato	cytosol	79.53	79.07
Solyc10g054910.1.1	Tomato	extracellular, unclear	79.53	79.07
AT2G21130.1	Thale cress	cytosol	79.53	78.16
AT2G16600.1	Thale cress	cytosol	78.95	78.03
TraesCS6A01G405900.1	Wheat	cytosol	76.02	77.84
AT4G34870.1	Thale cress	cytosol	76.61	76.16
HORVU6Hr1G092950.1	Barley	endoplasmic reticulum, golgi	78.36	70.9
Zm00001d009267_P001	Maize	cytosol	4.09	63.64
Zm00001d030339_P001	Maize	mitochondrion	64.91	60.66
TraesCS6B01G450300.1	Wheat	cytosol	76.02	59.36
TraesCS6A01G405800.1	Wheat	cytosol	79.53	55.06
TraesCS6B01G450400.1	Wheat	cytosol	70.18	54.79
Zm00001d014732_P002	Maize	mitochondrion	68.42	53.18
Zm00001d022631_P002	Maize	plastid	58.48	46.3
Zm00001d011104_P001	Maize	plastid	63.16	43.55
Zm00001d035761_P001	Maize	plastid	63.74	43.43
Zm00001d036442_P001	Maize	mitochondrion	68.42	42.24
Zm00001d008209_P001	Maize	plastid	62.57	38.08
Zm00001d014731_P017	Maize	endoplasmic reticulum, vacuole	58.48	33.78
Zm00001d037189_P004	Maize	extracellular	67.25	29.56
Zm00001d013010_P002	Maize	plastid	53.22	29.55
Zm00001d007826_P002	Maize	nucleus	62.57	15.97
Zm00001d018944_P004	Maize	nucleus	61.99	15.04
Zm00001d053620_P016	Maize	nucleus	47.95	10.01
Zm00001d015729_P005	Maize	nucleus	47.95	9.55

Protein Annotations

EntrezGene:103653580	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:AQK52877.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	UniProt:K7TWV7	PFAM:PF00160	PIRSF:PIRSF001467
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF403	SUPFAM:SSF50891
UniParc:UPI000220CC6A	EnsemblPlantsGene:Zm00001d050635	EnsemblPlants:Zm00001d050635_P001	EnsemblPlants:Zm00001d050635_T001	SEG:seg	:

Description

Peptidyl-prolyl cis-trans isomerase

Coordinates

chr4:+:107860850..107861365

Molecular Weight (calculated)

18286.9 Da

IEP (calculated)

8.335

GRAVY (calculated)

-0.267

Length

171 amino acids

Sequence
(BLAST)

001: MANPHVFFDM TVGGAPAGRI VMELYANEVP KTAENFRALC TGEKGVGKSG KPLHYKGSTF HRVIPQFMCQ GGDFTRGNGT GGESIYGEKF PDEKFVRKHT
101: GPGVLSMANA GPNTNGSQFF ICTVETPWLD GKHVVFGQVV EGMEVVKAIE KVGSRSGATS KEVKVADCGQ L

Best Arabidopsis Sequence Match ( AT2G21130.1 )
(BLAST)

001: MASHPKVFFD MTIGGAPAGK IVMELYTDKT PKTAENFRAL CTGEKGVGRS GKPLHFKGSS FHRVIPNFMC QGGDFTKGNG TGGESIYGAK FEDENFERKH
101: TGPGILSMAN AGANTNGSQF FICTVKTDWL DGKHVVFGQV VEGLDVVKAI EKIGSSSGKP TKPVVIADCG EISS

Arabidopsis Description

CYP19-2Peptidyl-prolyl cis-trans isomerase CYP19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.