Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011568.1-P | Field mustard | cytosol | 83.72 | 84.21 |
| CDX69094 | Canola | cytosol | 83.14 | 83.14 |
| GSMUA_Achr3P12630_001 | Banana | plasma membrane, unclear | 70.35 | 80.13 |
| AT2G16600.1 | Thale cress | cytosol | 80.23 | 79.77 |
| AT4G38740.1 | Thale cress | cytosol | 78.49 | 78.49 |
| Zm00001d016661_P001 | Maize | plastid | 76.74 | 76.74 |
| Zm00001d016660_P001 | Maize | cytosol | 76.74 | 76.74 |
| EES05164 | Sorghum | cytosol | 76.74 | 76.74 |
| Zm00001d050635_P001 | Maize | plastid | 76.16 | 76.61 |
| EES04388 | Sorghum | cytosol | 76.16 | 76.61 |
| AT2G21130.1 | Thale cress | cytosol | 77.33 | 76.44 |
| Os02t0121300-01 | Rice | extracellular | 76.16 | 76.16 |
| TraesCS6D01G066700.1 | Wheat | golgi, plastid | 75.0 | 75.44 |
| TraesCS6B01G093100.2 | Wheat | cytosol | 75.0 | 75.44 |
| TraesCS6A01G068900.1 | Wheat | cytosol | 75.0 | 75.44 |
| AT3G56070.1 | Thale cress | cytosol | 73.84 | 72.16 |
| TraesCS6A01G405900.1 | Wheat | cytosol | 67.44 | 69.46 |
| HORVU6Hr1G012570.2 | Barley | cytosol | 75.0 | 62.62 |
| HORVU6Hr1G092950.1 | Barley | endoplasmic reticulum, golgi | 68.02 | 61.9 |
| AT2G29960.1 | Thale cress | endoplasmic reticulum | 63.95 | 54.73 |
| AT5G58710.1 | Thale cress | endoplasmic reticulum | 63.37 | 53.43 |
| AT2G38730.1 | Thale cress | cytosol | 59.3 | 51.26 |
| TraesCS6B01G450300.1 | Wheat | cytosol | 64.53 | 50.68 |
| TraesCS6B01G450400.1 | Wheat | cytosol | 64.53 | 50.68 |
| AT3G55920.1 | Thale cress | endoplasmic reticulum | 63.37 | 47.81 |
| TraesCS6A01G405800.1 | Wheat | cytosol | 68.6 | 47.77 |
| AT4G34960.1 | Thale cress | endoplasmic reticulum | 53.49 | 41.07 |
| AT5G13120.1 | Thale cress | plastid | 61.05 | 40.54 |
| AT3G62030.2 | Thale cress | endoplasmic reticulum | 59.3 | 32.59 |
| AT2G15790.1 | Thale cress | cytosol | 61.05 | 29.09 |
| AT3G63400.4 | Thale cress | nucleus | 66.86 | 20.18 |
| AT4G32420.6 | Thale cress | nucleus | 48.84 | 10.04 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | EntrezGene:829639 | UniProt:A0A178UWH6 | ProteinID:AAA75512.1 | ProteinID:AEE86431.1 |
| EMBL:AK228231 | ArrayExpress:AT4G34870 | EnsemblPlantsGene:AT4G34870 | RefSeq:AT4G34870 | TAIR:AT4G34870 | RefSeq:AT4G34870-TAIR-G |
| EnsemblPlants:AT4G34870.1 | TAIR:AT4G34870.1 | EMBL:AY054468 | EMBL:AY087606 | EMBL:BT006560 | ProteinID:CAB45448.1 |
| ProteinID:CAB80204.1 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 |
| GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 | GO:GO:0005829 |
| GO:GO:0005886 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016853 |
| GO:GO:0019538 | GO:GO:0048046 | InterPro:IPR002130 | InterPro:IPR029000 | RefSeq:NP_195213.1 | ProteinID:OAO98279.1 |
| PFAM:PF00160 | PIRSF:PIRSF001467 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 | PANTHER:PTHR11071 |
| PANTHER:PTHR11071:SF382 | UniProt:Q42406 | Symbol:ROC5 | SUPFAM:SSF50891 | EMBL:U07276 | UniParc:UPI00000A5A35 |
Description
CYP18-4Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UWH6]
Coordinates
chr4:+:16614204..16615313
Molecular Weight (calculated)
18379.1 Da
IEP (calculated)
8.977
GRAVY (calculated)
-0.205
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPRVFFDM SLSGTPIGRI EMELFADTTP NTAENFRALC TGEKGMGKLG KPLHFKGSIF HRVIPGFMCQ GGDFTAKNGT GGESIYGAKF KDENFIKKHT
101: GAGILSMANS GPNTNGSQFF ICTDKTSWLD GKHVVFGQVV KGLDVVKAIE KVGSDSGKTS KVVTITDCGQ LS
101: GAGILSMANS GPNTNGSQFF ICTDKTSWLD GKHVVFGQVV KGLDVVKAIE KVGSDSGKTS KVVTITDCGQ LS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.