Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
cytosol:
21087465
|
plastid:
15069638
nucleus: 18022940 plasma membrane: 18260611 extracellular: 18372294 extracellular: 19038476 plastid: 21433289 extracellular: 23159799 nucleus: 26035336 extracellular: 26072143 plasma membrane: 27800704 plastid: 27992503 plasma membrane: 28056797 extracellular: 28232208 |
gfp PMID:
21087465
doi
Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-506, Korea.
msms PMID:
26072143
doi
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID:
18022940
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
15069638
doi
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID:
18372294
doi
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID:
19038476
doi
Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EES04388 | Sorghum | cytosol | 87.79 | 88.3 |
TraesCS6A01G068900.1 | Wheat | cytosol | 87.21 | 87.72 |
TraesCS6D01G066700.1 | Wheat | golgi, plastid | 87.21 | 87.72 |
Zm00001d016661_P001 | Maize | plastid | 87.21 | 87.21 |
Zm00001d016660_P001 | Maize | cytosol | 87.21 | 87.21 |
TraesCS6B01G093100.2 | Wheat | cytosol | 86.63 | 87.13 |
EES05164 | Sorghum | cytosol | 86.05 | 86.05 |
Zm00001d050635_P001 | Maize | plastid | 84.88 | 85.38 |
KRH24153 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 81.98 | 81.98 |
KRH60719 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 81.98 | 81.98 |
VIT_18s0001g14400.t01 | Wine grape | extracellular | 81.4 | 81.4 |
KRH51416 | Soybean | cytosol | 81.4 | 81.4 |
CDX90292 | Canola | cytosol | 80.81 | 80.81 |
VIT_03s0038g01930.t01 | Wine grape | cytosol | 80.81 | 80.81 |
CDY12100 | Canola | cytosol | 80.81 | 80.81 |
Bra010728.1-P | Field mustard | cytosol | 80.81 | 80.81 |
GSMUA_Achr3P12630_001 | Banana | plasma membrane, unclear | 70.93 | 80.79 |
CDY47469 | Canola | cytosol | 80.23 | 80.7 |
Bra037296.1-P | Field mustard | cytosol | 80.23 | 80.7 |
KRH29120 | Soybean | endoplasmic reticulum, nucleus | 80.23 | 80.23 |
CDY26779 | Canola | cytosol | 79.65 | 80.12 |
Bra011568.1-P | Field mustard | cytosol | 79.65 | 80.12 |
CDX69094 | Canola | cytosol | 79.07 | 79.07 |
AT4G38740.1 | Thale cress | cytosol | 78.49 | 78.49 |
Solyc01g111170.2.1 | Tomato | extracellular, nucleus | 77.91 | 78.36 |
PGSC0003DMT400004125 | Potato | extracellular | 77.33 | 77.78 |
AT2G21130.1 | Thale cress | cytosol | 78.49 | 77.59 |
AT2G16600.1 | Thale cress | cytosol | 77.91 | 77.46 |
Bra033574.1-P | Field mustard | cytosol | 76.74 | 76.74 |
CDX72741 | Canola | cytosol | 76.74 | 76.74 |
CDY22414 | Canola | cytosol, extracellular | 76.74 | 76.74 |
AT4G34870.1 | Thale cress | cytosol | 76.16 | 76.16 |
PGSC0003DMT400011344 | Potato | cytosol | 75.58 | 75.58 |
Solyc10g054910.1.1 | Tomato | extracellular, unclear | 75.58 | 75.58 |
HORVU6Hr1G012570.2 | Barley | cytosol | 86.63 | 72.33 |
Os09t0571400-01 | Rice | mitochondrion | 72.67 | 69.83 |
Os10t0154700-01 | Rice | cytosol | 63.37 | 60.22 |
Os06t0708500-01 | Rice | plasma membrane, plastid | 68.02 | 52.0 |
Os06t0708400-01 | Rice | plasma membrane | 62.79 | 51.92 |
Os03t0811600-01 | Rice | nucleus, plastid | 58.14 | 49.02 |
Os09t0537600-01 | Rice | endoplasmic reticulum | 58.14 | 46.51 |
Os05t0103200-01 | Rice | plastid | 62.21 | 42.8 |
Os06t0216800-01 | Rice | cytosol | 64.53 | 28.03 |
Os02t0761100-01 | Rice | cytosol | 61.05 | 26.05 |
Os02t0204300-01 | Rice | nucleus | 0.0 | 0.0 |
Os07t0179200-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
MapMan:18.12.1 | Gene3D:2.40.100.10 | EntrezGene:4328121 | EMBL:AK061894 | EMBL:AK098919 | ProteinID:BAD07601.1 |
ProteinID:BAD08141.1 | ProteinID:BAF07631.1 | ProteinID:BAS76709.1 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS |
InterPro:Cyclophilin-type_PPIase_dom | ProteinID:EAZ21539.1 | EMBL:EU267953 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 |
GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0016853 | GO:GO:0019538 | EMBL:GQ848065 | InterPro:IPR002130 | InterPro:IPR029000 | EMBL:KY038492 |
EnsemblPlantsGene:Os02g0121300 | EnsemblPlants:Os02t0121300-01 | PFAM:PF00160 | PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 |
PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF403 | UniProt:Q6ZH98 | SUPFAM:SSF50891 | UniParc:UPI00000A30DA |
RefSeq:XP_015625227.1 | SEG:seg | : | : | : | : |
Description
LATERAL ROOTLESS2Cyclophilin, Peptidyl-prolyl cis-trans isomerase, Auxin signal transduction, Lateral root initiation, Stress tolerance (Os02t0121300-01)
Coordinates
chr2:+:1116066..1116952
Molecular Weight (calculated)
18362.0 Da
IEP (calculated)
8.490
GRAVY (calculated)
-0.157
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNTRVFFDM TVGGAPAGRI VMELYAKDVP RTAENFRALC TGEKGVGKSG KPLHYKGSTF HRVIPEFMCQ GGDFTRGNGT GGESIYGEKF ADEVFKFKHD
101: SPGILSMANA GPNTNGSQFF ICTVPCSWLD GKHVVFGRVV EGMDVVKAIE KVGSRGGSTA KPVVIADCGQ LS
101: SPGILSMANA GPNTNGSQFF ICTVPCSWLD GKHVVFGRVV EGMDVVKAIE KVGSRGGSTA KPVVIADCGQ LS
001: MASHPKVFFD MTIGGAPAGK IVMELYTDKT PKTAENFRAL CTGEKGVGRS GKPLHFKGSS FHRVIPNFMC QGGDFTKGNG TGGESIYGAK FEDENFERKH
101: TGPGILSMAN AGANTNGSQF FICTVKTDWL DGKHVVFGQV VEGLDVVKAI EKIGSSSGKP TKPVVIADCG EISS
101: TGPGILSMAN AGANTNGSQF FICTVKTDWL DGKHVVFGQV VEGLDVVKAI EKIGSSSGKP TKPVVIADCG EISS
Arabidopsis Description
CYP19-2Peptidyl-prolyl cis-trans isomerase CYP19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKQ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.