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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
cytosol: 21087465
plastid: 15069638
nucleus: 18022940
plasma membrane: 18260611
extracellular: 18372294
extracellular: 19038476
plastid: 21433289
extracellular: 23159799
nucleus: 26035336
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797
extracellular: 28232208
gfp PMID: 21087465 doi
JC Ahn, DW Kim, YN You, MS Seok, JM Park, H Hwang, BG Kim, S Luan, HS Park, HS Cho
Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-506, Korea.
msms PMID: 26072143 doi
B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He
State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.
msms PMID: 18022940 doi
F Tan, G Li, BR Chitteti, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 15069638 doi
N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 18372294 doi
T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa
Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.
msms PMID: 19038476 doi
XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim
Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES04388 Sorghum cytosol 87.79 88.3
TraesCS6A01G068900.1 Wheat cytosol 87.21 87.72
TraesCS6D01G066700.1 Wheat golgi, plastid 87.21 87.72
Zm00001d016661_P001 Maize plastid 87.21 87.21
Zm00001d016660_P001 Maize cytosol 87.21 87.21
TraesCS6B01G093100.2 Wheat cytosol 86.63 87.13
EES05164 Sorghum cytosol 86.05 86.05
Zm00001d050635_P001 Maize plastid 84.88 85.38
KRH24153 Soybean endoplasmic reticulum, mitochondrion, nucleus 81.98 81.98
KRH60719 Soybean cytosol, endoplasmic reticulum, mitochondrion 81.98 81.98
VIT_18s0001g14400.t01 Wine grape extracellular 81.4 81.4
KRH51416 Soybean cytosol 81.4 81.4
CDX90292 Canola cytosol 80.81 80.81
VIT_03s0038g01930.t01 Wine grape cytosol 80.81 80.81
CDY12100 Canola cytosol 80.81 80.81
Bra010728.1-P Field mustard cytosol 80.81 80.81
GSMUA_Achr3P12630_001 Banana plasma membrane, unclear 70.93 80.79
CDY47469 Canola cytosol 80.23 80.7
Bra037296.1-P Field mustard cytosol 80.23 80.7
KRH29120 Soybean endoplasmic reticulum, nucleus 80.23 80.23
CDY26779 Canola cytosol 79.65 80.12
Bra011568.1-P Field mustard cytosol 79.65 80.12
CDX69094 Canola cytosol 79.07 79.07
AT4G38740.1 Thale cress cytosol 78.49 78.49
Solyc01g111170.2.1 Tomato extracellular, nucleus 77.91 78.36
PGSC0003DMT400004125 Potato extracellular 77.33 77.78
AT2G21130.1 Thale cress cytosol 78.49 77.59
AT2G16600.1 Thale cress cytosol 77.91 77.46
Bra033574.1-P Field mustard cytosol 76.74 76.74
CDX72741 Canola cytosol 76.74 76.74
CDY22414 Canola cytosol, extracellular 76.74 76.74
AT4G34870.1 Thale cress cytosol 76.16 76.16
PGSC0003DMT400011344 Potato cytosol 75.58 75.58
Solyc10g054910.1.1 Tomato extracellular, unclear 75.58 75.58
HORVU6Hr1G012570.2 Barley cytosol 86.63 72.33
Os09t0571400-01 Rice mitochondrion 72.67 69.83
Os10t0154700-01 Rice cytosol 63.37 60.22
Os06t0708500-01 Rice plasma membrane, plastid 68.02 52.0
Os06t0708400-01 Rice plasma membrane 62.79 51.92
Os03t0811600-01 Rice nucleus, plastid 58.14 49.02
Os09t0537600-01 Rice endoplasmic reticulum 58.14 46.51
Os05t0103200-01 Rice plastid 62.21 42.8
Os06t0216800-01 Rice cytosol 64.53 28.03
Os02t0761100-01 Rice cytosol 61.05 26.05
Os02t0204300-01 Rice nucleus 0.0 0.0
Os07t0179200-01 Rice nucleus 0.0 0.0
Protein Annotations
MapMan:18.12.1Gene3D:2.40.100.10EntrezGene:4328121EMBL:AK061894EMBL:AK098919ProteinID:BAD07601.1
ProteinID:BAD08141.1ProteinID:BAF07631.1ProteinID:BAS76709.1InterPro:Cyclophilin-like_dom_sfInterPro:Cyclophilin-type_PPIaseInterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_domProteinID:EAZ21539.1EMBL:EU267953GO:GO:0000413GO:GO:0003674GO:GO:0003755
GO:GO:0003824GO:GO:0006457GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016853GO:GO:0019538EMBL:GQ848065InterPro:IPR002130InterPro:IPR029000EMBL:KY038492
EnsemblPlantsGene:Os02g0121300EnsemblPlants:Os02t0121300-01PFAM:PF00160PIRSF:PIRSF001467PRINTS:PR00153ScanProsite:PS00170
PFscan:PS50072PANTHER:PTHR11071PANTHER:PTHR11071:SF403UniProt:Q6ZH98SUPFAM:SSF50891UniParc:UPI00000A30DA
RefSeq:XP_015625227.1SEG:seg::::
Description
LATERAL ROOTLESS2Cyclophilin, Peptidyl-prolyl cis-trans isomerase, Auxin signal transduction, Lateral root initiation, Stress tolerance (Os02t0121300-01)
Coordinates
chr2:+:1116066..1116952
Molecular Weight (calculated)
18362.0 Da
IEP (calculated)
8.490
GRAVY (calculated)
-0.157
Length
172 amino acids
Sequence
(BLAST)
001: MSNTRVFFDM TVGGAPAGRI VMELYAKDVP RTAENFRALC TGEKGVGKSG KPLHYKGSTF HRVIPEFMCQ GGDFTRGNGT GGESIYGEKF ADEVFKFKHD
101: SPGILSMANA GPNTNGSQFF ICTVPCSWLD GKHVVFGRVV EGMDVVKAIE KVGSRGGSTA KPVVIADCGQ LS
Best Arabidopsis Sequence Match ( AT2G21130.1 )
(BLAST)
001: MASHPKVFFD MTIGGAPAGK IVMELYTDKT PKTAENFRAL CTGEKGVGRS GKPLHFKGSS FHRVIPNFMC QGGDFTKGNG TGGESIYGAK FEDENFERKH
101: TGPGILSMAN AGANTNGSQF FICTVKTDWL DGKHVVFGQV VEGLDVVKAI EKIGSSSGKP TKPVVIADCG EISS
Arabidopsis Description
CYP19-2Peptidyl-prolyl cis-trans isomerase CYP19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKQ0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.