Factsheet for Os06t0216800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88080	Sorghum	cytosol	87.88	89.46
TraesCS7A01G175300.1	Wheat	cytosol	84.85	88.65
TraesCS7D01G176900.1	Wheat	cytosol	83.84	88.53
TraesCS7B01G080700.1	Wheat	cytosol	84.85	88.42
HORVU7Hr1G036160.1	Barley	cytosol	84.6	88.16
Zm00001d037189_P004	Maize	extracellular	86.36	87.92
Os02t0761100-01	Rice	cytosol	84.34	82.88
GSMUA_Achr8P23380_001	Banana	cytosol	79.29	81.35
GSMUA_Achr5P05580_001	Banana	cytosol	78.54	79.34
PGSC0003DMT400066358	Potato	cytosol	72.22	79.01
Solyc01g108340.2.1	Tomato	cytosol	72.22	79.01
VIT_03s0063g01030.t01	Wine grape	cytosol	71.72	78.67
KRH50243	Soybean	cytosol	70.2	77.01
KRH71172	Soybean	cytosol	70.2	77.01
KRH57738	Soybean	cytosol, nucleus	69.95	76.94
KRH04660	Soybean	cytosol, nucleus	69.19	76.11
AT2G15790.1	Thale cress	cytosol	65.91	72.3
Bra015237.1-P	Field mustard	cytosol	64.9	71.19
CDY36653	Canola	cytosol	64.9	71.19
CDX71247	Canola	cytosol	64.9	71.19
PGSC0003DMT400026079	Potato	cytosol	63.38	69.53
Solyc02g090480.2.1	Tomato	cytosol	62.12	68.14
Os02t0121300-01	Rice	extracellular	28.03	64.53
Os09t0571400-01	Rice	mitochondrion	27.53	60.89
Os10t0154700-01	Rice	cytosol	25.76	56.35
Os03t0811600-01	Rice	nucleus, plastid	25.25	49.02
Os09t0537600-01	Rice	endoplasmic reticulum	26.52	48.84
Os06t0708400-01	Rice	plasma membrane	24.75	47.12
Os06t0708500-01	Rice	plasma membrane, plastid	26.77	47.11
Os05t0103200-01	Rice	plastid	26.26	41.6
Os07t0179200-01	Rice	nucleus	3.79	5.32
Os02t0204300-01	Rice	nucleus	2.53	2.72

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:4340493	EMBL:AK068112	ProteinID:BAD35839.1
ProteinID:BAF19062.1	ProteinID:BAS96793.1	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR029000
EnsemblPlantsGene:Os06g0216800	EnsemblPlants:Os06t0216800-01	PFAM:PF00160	PFAM:PF13181	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50005	PFscan:PS50072	PFscan:PS50293	PANTHER:PTHR11071	PANTHER:PTHR11071:SF310	UniProt:Q69TG8
SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF50891	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI00004038DB	RefSeq:XP_015641020.1	SEG:seg	:	:	:

Description

CYCLOPHILIN 40ASimilar to Cyclophilin-40 (Expressed protein). (Os06t0216800-01)

Coordinates

chr6:-:5933850..5939505

Molecular Weight (calculated)

43251.9 Da

IEP (calculated)

5.714

GRAVY (calculated)

-0.507

Length

396 amino acids

Sequence
(BLAST)

001: MEGGGEGAES AAVASAAAAE VEVKNPRCFM DVSIGGEIEG RIVIELYASV VPRTAENFRA LCTGEKGVGA VTGKHLHYKG SCFHRVIKGF MVQGGDITAG
101: DGTGGESIYG LKFEDENFVL KHERKGMLSM ANSGPNTNGS QFFITTTRTP HLDGKHVVFG RVIKGMGVVR SVEHAPVGEA DRPTSDVEIV DCGELPEGAD
201: DGVVNFFNDG DTYPDWPNDL DEKPMEVSWW MDAVESAKAF GNNNFKKQDY KAALRKYRKA LRYLDVCWEK EDIDEEKSSA LRKTKSIILT NSSACKLKLG
301: DLKGALLDAD FALRESEGNA KAFFRQGQAH IALNDIDAAV ESFKHALELE PSDGGIKREL AAAKKKIADR RNQERKAFAR MFQPSGKSDK DNEESK

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.