CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71172	Soybean	cytosol	96.68	96.68
VIT_03s0063g01030.t01	Wine grape	cytosol	83.93	83.93
Solyc01g108340.2.1	Tomato	cytosol	82.55	82.32
KRH04660	Soybean	cytosol, nucleus	81.72	81.94
KRH57738	Soybean	cytosol, nucleus	81.16	81.39
PGSC0003DMT400066358	Potato	cytosol	81.44	81.22
GSMUA_Achr8P23380_001	Banana	cytosol	78.95	73.83
EER88080	Sorghum	cytosol	76.73	71.21
Zm00001d037189_P004	Maize	extracellular	76.73	71.21
TraesCS7D01G176900.1	Wheat	cytosol	73.41	70.67
GSMUA_Achr5P05580_001	Banana	cytosol	76.73	70.66
Os06t0216800-01	Rice	cytosol	77.01	70.2
TraesCS7A01G175300.1	Wheat	cytosol	73.13	69.66
HORVU7Hr1G036160.1	Barley	cytosol	73.13	69.47
TraesCS7B01G080700.1	Wheat	cytosol	73.13	69.47
EES05845	Sorghum	cytosol	74.52	67.93
Os02t0761100-01	Rice	cytosol	74.79	67.0
TraesCS6A01G313700.1	Wheat	cytosol	72.3	64.29
TraesCS6D01G293100.1	Wheat	cytosol	72.3	63.97
TraesCS6B01G343800.1	Wheat	cytosol	72.02	63.73
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	30.19	63.37
KRG97056	Soybean	cytosol	29.92	61.71
KRH68802	Soybean	cytosol	29.36	60.57
KRH29120	Soybean	endoplasmic reticulum, nucleus	28.53	59.88
KRH51416	Soybean	cytosol	28.25	59.3
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	28.25	59.3
HORVU6Hr1G077290.1	Barley	plastid	71.75	56.92
KRH13330	Soybean	endoplasmic reticulum, nucleus	26.04	51.93
KRG98290	Soybean	endoplasmic reticulum	28.81	50.98
KRH30309	Soybean	endoplasmic reticulum	27.7	49.02
KRH37809	Soybean	nucleus	26.32	48.97
KRH20677	Soybean	cytosol	24.65	48.63
KRH31143	Soybean	endoplasmic reticulum	28.25	42.86
KRH60706	Soybean	endoplasmic reticulum	27.42	42.67
KRG97736	Soybean	endoplasmic reticulum	27.42	42.13
KRH29272	Soybean	endoplasmic reticulum	27.42	41.95
KRH24294	Soybean	endoplasmic reticulum	27.15	41.53
KRG93128	Soybean	nucleus, plastid	28.81	41.11
KRH36359	Soybean	nucleus, plastid	27.98	40.24
KRG96627	Soybean	nucleus, plastid	27.42	38.08
KRH33684	Soybean	nucleus, plastid	27.42	37.64
KRH68358	Soybean	plastid	22.44	34.32
KRG95597	Soybean	nucleus	39.06	21.4
KRH67275	Soybean	nucleus	38.23	20.66
KRH61803	Soybean	nucleus	31.86	13.64
KRH52477	Soybean	nucleus	31.3	13.29
KRH15996	Soybean	nucleus	29.36	12.49

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100813496	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02004673	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_07G210200	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	UniProt:I1KLX5
InterPro:IPR002130	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR029000	ProteinID:KRH50242.1
EnsemblPlants:KRH50243	ProteinID:KRH50243	ProteinID:KRH50243.1	PFAM:PF00160	PFAM:PF00515	PRINTS:PR00153
ScanProsite:PS00170	PFscan:PS50005	PFscan:PS50072	PFscan:PS50293	PANTHER:PTHR11071	PANTHER:PTHR11071:SF310
SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF50891	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1
InterPro:TPR_repeat	UniParc:UPI0002338374	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:38085043..38089896

Molecular Weight (calculated)

40249.6 Da

IEP (calculated)

5.542

GRAVY (calculated)

-0.554

Length

361 amino acids

Sequence
(BLAST)

001: MGRGRCFLDI SIGQELEGRI VVELYDDVVP KTAENFRALC TGEKGIGPNT GVPLHFKGSC FHRVIKGFMI QGGDISAGDG TGGESIYGLK FEDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FISTTRTSHL DGKHVVFGKV VKGMGVVRSV EHVATGDDDR PALDVKVVDC GEIPEGEDDG ISNFFKDGDT YPDWPADLDE
201: SPNELEWWMK SVDSIKAFGN EYYRKQDYKM ALRKYRKALR YLDICWEKEG IDEEISSSLR KTKSQIFTNS SASKLKLGDI KGALLDTEFA MREGDDNAKA
301: LFRQGQAYMA LHDIDAAVES FKKALTLEPN DAGIKKELAA ARKMIADRRD QEKKAYSKMF Q

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.