Factsheet for TraesCS6B01G343800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G293100.1	Wheat	cytosol	97.55	97.55
TraesCS6A01G313700.1	Wheat	cytosol	97.06	97.54
HORVU6Hr1G077290.1	Barley	plastid	96.32	86.37
TraesCS7B01G080700.1	Wheat	cytosol	74.26	79.74
Os02t0761100-01	Rice	cytosol	78.43	79.4
EES05845	Sorghum	cytosol	76.47	78.79
GSMUA_Achr8P23380_001	Banana	cytosol	72.3	76.42
GSMUA_Achr5P05580_001	Banana	cytosol	72.06	75.0
PGSC0003DMT400066358	Potato	cytosol	66.18	74.59
VIT_03s0063g01030.t01	Wine grape	cytosol	65.93	74.52
Solyc01g108340.2.1	Tomato	cytosol	65.69	74.03
KRH57738	Soybean	cytosol, nucleus	64.22	72.78
KRH71172	Soybean	cytosol	63.97	72.3
KRH50243	Soybean	cytosol	63.73	72.02
KRH04660	Soybean	cytosol, nucleus	62.99	71.39
AT2G15790.1	Thale cress	cytosol	60.78	68.7
Bra015237.1-P	Field mustard	cytosol	60.05	67.87
CDY36653	Canola	cytosol	60.05	67.87
CDX71247	Canola	cytosol	59.31	67.04
PGSC0003DMT400026079	Potato	cytosol	57.6	65.1
Solyc02g090480.2.1	Tomato	cytosol	56.37	63.71
TraesCS6B01G093100.2	Wheat	cytosol	26.47	63.16
TraesCS7B01G309500.2	Wheat	mitochondrion	26.23	49.08
TraesCS5B01G478800.1	Wheat	plastid	23.28	47.98
TraesCS6B01G450300.1	Wheat	cytosol	25.25	47.03
TraesCS5B01G329000.1	Wheat	endoplasmic reticulum	24.75	46.76
TraesCS6B01G450400.1	Wheat	cytosol	23.77	44.29
TraesCS1B01G011100.1	Wheat	plastid	25.74	42.86
TraesCS3B01G178000.1	Wheat	plastid	24.51	41.67
TraesCS2B01G260600.1	Wheat	nucleus	31.13	20.0
TraesCS6B01G208900.2	Wheat	cytosol	29.66	14.25

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR029000
PFAM:PF00160	PFAM:PF00515	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50005	PFscan:PS50072
PFscan:PS50293	PANTHER:PTHR11071	PANTHER:PTHR11071:SF310	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF50891
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS6B01G343800	EnsemblPlants:TraesCS6B01G343800.1
TIGR:cd01926	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:605553505..605557664

Molecular Weight (calculated)

44539.5 Da

IEP (calculated)

5.279

GRAVY (calculated)

-0.438

Length

408 amino acids

Sequence
(BLAST)

001: MEGEGEGAAA LAAQAPAAAA AAEVSNPRCY FDVSIGGEME GRIVMDLYAS VVPRTAENFR ALCTGEKGVS AATGARLHYK GSSFHRIIKG FMVQGGDITA
101: GDGTGGESIY GLNFEDENFV LKHERKGMLS MANSGPNTNG SQFFITTTRT PHLDRKHVVF GRVVKGMGVV RAMEHVCAGE ADLPTDDIVI VDCGELPEGS
201: TEGVANFFKD GDMYPDWPID LDEKPADVLW WINAVDSAKS FGNENFKKHD YKAALRKYRK AMRYLDICWE KEEIDQENSS ALRKTKSIIL TNSSACKLKL
301: GDVEGALLDA DFALRETEGN AKAFFRQGQA RMVLKNIDAA VESFQRALEL EPNDGGIKRE LAAAKKKVTD RRNLERKAFS KMFETSGSSE KSEEVLAATS
401: EKSGEDKN

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.