Factsheet for GSMUA_Achr5P05580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P23380_001	Banana	cytosol	88.78	90.16
VIT_03s0063g01030.t01	Wine grape	cytosol	73.72	80.06
TraesCS7D01G176900.1	Wheat	cytosol	76.53	80.0
Zm00001d037189_P004	Maize	extracellular	79.34	79.95
TraesCS7A01G175300.1	Wheat	cytosol	77.3	79.95
TraesCS7B01G080700.1	Wheat	cytosol	77.3	79.74
EER88080	Sorghum	cytosol	79.08	79.69
HORVU7Hr1G036160.1	Barley	cytosol	77.04	79.47
Os06t0216800-01	Rice	cytosol	79.34	78.54
Solyc01g108340.2.1	Tomato	cytosol	72.19	78.18
PGSC0003DMT400066358	Potato	cytosol	71.68	77.62
KRH57738	Soybean	cytosol, nucleus	71.17	77.5
KRH04660	Soybean	cytosol, nucleus	70.66	76.94
KRH71172	Soybean	cytosol	70.66	76.73
KRH50243	Soybean	cytosol	70.66	76.73
Os02t0761100-01	Rice	cytosol	78.32	76.18
EES05845	Sorghum	cytosol	74.23	73.48
TraesCS6D01G293100.1	Wheat	cytosol	75.26	72.3
TraesCS6B01G343800.1	Wheat	cytosol	75.0	72.06
TraesCS6A01G313700.1	Wheat	cytosol	74.49	71.92
AT2G15790.1	Thale cress	cytosol	65.82	71.47
CDX71247	Canola	cytosol	64.54	70.08
Bra015237.1-P	Field mustard	cytosol	64.29	69.81
CDY36653	Canola	cytosol	64.29	69.81
PGSC0003DMT400026079	Potato	cytosol	62.5	67.87
Solyc02g090480.2.1	Tomato	cytosol	61.22	66.48
HORVU6Hr1G077290.1	Barley	plastid	74.23	63.96
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	24.49	63.58
GSMUA_Achr10P...	Banana	endoplasmic reticulum	28.57	56.28
GSMUA_Achr7P17320_001	Banana	endoplasmic reticulum	29.34	55.02
GSMUA_Achr7P04880_001	Banana	cytosol	25.26	51.03
GSMUA_Achr2P00020_001	Banana	plastid	25.51	47.85
GSMUA_Achr1P07610_001	Banana	endoplasmic reticulum	24.23	43.98
GSMUA_Achr2P21150_001	Banana	plastid	27.55	43.37
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	27.04	39.11
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	33.16	19.15
GSMUA_Achr5P03050_001	Banana	nucleus	33.67	19.02
GSMUA_Achr10P...	Banana	nucleus	33.67	15.87
GSMUA_Achr2P15900_001	Banana	nucleus	33.16	15.64

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr5G05580_001	EnsemblPlants:GSMUA_Achr5P05580_001	EnsemblPlants:GSMUA_Achr5T05580_001	InterPro:IPR002130	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	InterPro:IPR029000	UniProt:M0SVY7	PFAM:PF00160	PFAM:PF00515	PRINTS:PR00153
PFscan:PS50005	PFscan:PS50072	PFscan:PS50293	PANTHER:PTHR11071	PANTHER:PTHR11071:SF310	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF50891	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat
UniParc:UPI000296D24F	SEG:seg	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase CYP40 [Source:GMGC_GENE;Acc:GSMUA_Achr5G05580_001]

Coordinates

chr5:+:4134061..4153235

Molecular Weight (calculated)

43270.1 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.538

Length

392 amino acids

Sequence
(BLAST)

001: MEVGEGDAPA EVEAEAEAKR NPRCYMDVTI GGDMEGRIVV ELFAGVVPRT AENFRALCTG EKGVGPNTGV PLHLKGSCFH RVIKGFMIQG GDISAGDGTG
101: GESIYGLKFE DENFALKHER KGMLSMANSG PNTNGSQFFI TTTRTPHLDG KHVVFGKVLK GMGVVRSIEH TPVGDADCPT VDVVIADCGE LPEGADDGVS
201: NFFRDGDFYA DWPLDLDDKP SEVSWWMNAV NSAKTFGNDY FKKQDYKMAL KKYRKAMRYL DVCWEKEEID EGNLLLRKTK SIILTNSSAC KLKLGDLKGS
301: LLDADFALRE REGNAKAYFR QGQAYMALND VDAAVESFKN ALEIEPNDGG IKRELAAAKK KIADRRDQER KAYSRMFQTS VKPEENNEDR NG

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.