Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- endoplasmic reticulum 8
- extracellular 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 80.86 | 84.92 |
| VIT_06s0004g06610.t01 | Wine grape | endoplasmic reticulum | 80.86 | 84.5 |
| Solyc06g076970.2.1 | Tomato | nucleus | 80.38 | 81.16 |
| PGSC0003DMT400078234 | Potato | endoplasmic reticulum | 78.95 | 79.71 |
| HORVU7Hr1G095720.2 | Barley | mitochondrion | 80.38 | 77.06 |
| TraesCS7B01G309500.2 | Wheat | mitochondrion | 80.38 | 77.06 |
| TraesCS7A01G410100.2 | Wheat | mitochondrion | 80.38 | 77.06 |
| HORVU6Hr1G050970.4 | Barley | cytosol, endoplasmic reticulum | 79.43 | 76.85 |
| TraesCS7D01G403300.2 | Wheat | mitochondrion | 79.9 | 76.61 |
| OQU77069 | Sorghum | mitochondrion | 80.38 | 76.36 |
| Zm00001d014732_P002 | Maize | mitochondrion | 80.38 | 76.36 |
| Os06t0708500-01 | Rice | plasma membrane, plastid | 81.34 | 75.56 |
| GSMUA_Achr3P12630_001 | Banana | plasma membrane, unclear | 51.2 | 70.86 |
| GSMUA_Achr7P04880_001 | Banana | cytosol | 65.55 | 70.62 |
| Bra007200.1-P | Field mustard | endoplasmic reticulum | 69.38 | 64.73 |
| CDY27255 | Canola | endoplasmic reticulum | 69.38 | 64.73 |
| CDX72190 | Canola | endoplasmic reticulum | 69.38 | 64.73 |
| KRG97736 | Soybean | endoplasmic reticulum | 72.73 | 64.68 |
| KRH31143 | Soybean | endoplasmic reticulum | 72.73 | 63.87 |
| AT3G55920.1 | Thale cress | endoplasmic reticulum | 67.46 | 61.84 |
| Zm00001d036442_P001 | Maize | mitochondrion | 81.82 | 61.73 |
| GSMUA_Achr1P07610_001 | Banana | endoplasmic reticulum | 53.11 | 51.39 |
| GSMUA_Achr2P00020_001 | Banana | plastid | 50.72 | 50.72 |
| GSMUA_Achr2P21150_001 | Banana | plastid | 56.94 | 47.79 |
| GSMUA_Achr6P16580_001 | Banana | endoplasmic reticulum, mitochondrion | 56.46 | 43.54 |
| GSMUA_Achr5P05580_001 | Banana | cytosol | 55.02 | 29.34 |
| GSMUA_Achr8P23380_001 | Banana | cytosol | 53.11 | 28.76 |
| GSMUA_Achr9P28600_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 50.24 | 15.46 |
| GSMUA_Achr5P03050_001 | Banana | nucleus | 50.24 | 15.13 |
| GSMUA_Achr10P... | Banana | nucleus | 49.76 | 12.5 |
| GSMUA_Achr2P15900_001 | Banana | nucleus | 48.33 | 12.15 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom |
| GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr7G17320_001 |
| EnsemblPlants:GSMUA_Achr7P17320_001 | EnsemblPlants:GSMUA_Achr7T17320_001 | InterPro:IPR002130 | InterPro:IPR029000 | UniProt:M0TIB9 | PFAM:PF00160 |
| PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF384 |
| SUPFAM:SSF50891 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000295270B | SEG:seg | : |
Description
Peptidyl-prolyl cis-trans isomerase CYP19-4 [Source:GMGC_GENE;Acc:GSMUA_Achr7G17320_001]
Coordinates
chr7:-:19416931..19425268
Molecular Weight (calculated)
22374.1 Da
IEP (calculated)
10.275
GRAVY (calculated)
-0.083
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKQRSAAA TWLRWFILFI GAVVVVQAKA SKDSLKEVTH KVYFDVEIGG KPAGRIVMGL FGKAVPKTAE NFRALCTGEK GIGKSGKTLH YKGSAFHRII
101: PSFMIQGGDF TLGDGRGGES IYGSKFADEN FKLKHTGPGL LSMANAGPDT NGSQFFITTV TTSWLDGKHV VFGKVLSGMD VVYKIEAEGR QNGSPKSKVV
201: IADSGELPL
101: PSFMIQGGDF TLGDGRGGES IYGSKFADEN FKLKHTGPGL LSMANAGPDT NGSQFFITTV TTSWLDGKHV VFGKVLSGMD VVYKIEAEGR QNGSPKSKVV
201: IADSGELPL
001: MASSVTLLLW SLLLLGTLSA IQAKKSKENL KEITHKVYFD VEIDGKAAGR IVMGLFGKTV PKTVENFRAL CTGEKGIGKN GKALHYKGSS FHRIIPSFML
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL
Arabidopsis Description
CYP20-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UBF4]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.