Factsheet for GSMUA_Achr5P03050_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	13.54	62.25
GSMUA_Achr7P17320_001	Banana	endoplasmic reticulum	15.13	50.24
GSMUA_Achr10P...	Banana	endoplasmic reticulum	14.12	49.25
AT3G63400.4	Thale cress	nucleus	38.62	47.02
KRH67275	Soybean	nucleus	45.1	46.86
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	48.99	46.77
KRG95597	Soybean	nucleus	44.38	46.74
CDY53714	Canola	nucleus	37.32	46.58
Bra040447.1-P	Field mustard	nucleus	35.16	46.12
GSMUA_Achr7P04880_001	Banana	cytosol	12.82	45.88
TraesCS2B01G260600.1	Wheat	nucleus	41.5	45.35
TraesCS2D01G244700.1	Wheat	nucleus	41.35	45.13
HORVU2Hr1G056230.1	Barley	nucleus	40.2	45.0
GSMUA_Achr1P07610_001	Banana	endoplasmic reticulum	13.98	44.91
TraesCS2A01G237700.1	Wheat	nucleus	41.5	44.79
GSMUA_Achr2P00020_001	Banana	plastid	13.4	44.5
EER95944	Sorghum	nucleus	41.21	44.14
Solyc09g065720.2.1	Tomato	nucleus	41.79	43.94
PGSC0003DMT400049782	Potato	nucleus	41.5	43.77
Zm00001d007826_P002	Maize	nucleus	41.79	43.28
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	41.79	42.71
Zm00001d018944_P004	Maize	nucleus	41.93	41.28
CDX93909	Canola	nucleus	36.17	41.01
GSMUA_Achr2P21150_001	Banana	plastid	13.11	36.55
GSMUA_Achr8P23380_001	Banana	cytosol	19.02	34.2
GSMUA_Achr2P15900_001	Banana	nucleus	40.49	33.81
GSMUA_Achr5P05580_001	Banana	cytosol	19.02	33.67
GSMUA_Achr10P...	Banana	nucleus	40.06	33.41
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	12.82	32.84

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G03050_001
EnsemblPlants:GSMUA_Achr5P03050_001	EnsemblPlants:GSMUA_Achr5T03050_001	InterPro:IPR002130	InterPro:IPR029000	UniProt:M0SV84	PFAM:PF00160
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF396	SUPFAM:SSF50891
UniParc:UPI0002965EF2	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G03050_001]

Coordinates

chr5:+:2076312..2084934

Molecular Weight (calculated)

76253.0 Da

IEP (calculated)

11.027

GRAVY (calculated)

-1.286

Length

694 amino acids

Sequence
(BLAST)

001: MATKKNPTVF LDISVDRNPA ERMEIELFAD VVPKTAENFR ALCTGEKGIG DSTRLPLHYK GSFFHRIVKG FVAQGGDFSR RDGSGGESIY GRKFPDENFK
101: LKHDGPGLLS MASSAPNSNG SQFFITFKAT PQLDGKNVVF GKVVSGSNLL KKIEQAGSEK GKPLCLVKVV DCGEASDGKT QVVPGKEKEK KCNESSLDLC
201: SNDSSGGEQR SSHKRTIKDK RKKRKRRYSS SDSSSSDDSD SDSYSSDSGS SSYSDSSDSS SSSGARYKRR KRTSRKKKNR NGKGKRDHHT DKRQRRHDKK
301: STRKPKWSSS SSDSESETTS GSSSSGSERA GHRDDSRKAK HSLQTADTSL EVGKKQSLSI VPGKESATER TKKSERVAAQ VNASRESGLV FQETRDDPED
401: SYRSIGKFNK MANQPPKSNE KSSRSSSPII PEGDRIGSPR VHADKGPTSS PSGVPHIGGA NQSSVGGISR SKSHSASPTR SPGRKASEPA LKQLDVSRKP
501: SPSGPPKRIR KGRGFSDKYA YVRKYRTPSP ERSPVRSYYY RGRYEQEWGR NRYSRRTFNS ERSPARRYQG SPRGSSPPRY RGRRDRSRSM SRSPVGYRSR
601: RRDRTQSPRR SRSPLDDQKP ALGNRIQSRL GPQGGGYRSV SGRSRSRSPH PSAFKSDAGP QDMEDKGGSQ SSSRSSSPAP NNGLVAYGDG SPDR

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.