Factsheet for VIT_00s0179g00290.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 2
golgi 4
extracellular 4
endoplasmic reticulum 4
vacuole 3
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	extracellular, mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0038g01930.t01	Wine grape	cytosol	15.96	67.44
VIT_18s0001g14400.t01	Wine grape	extracellular	15.82	66.86
KRH67275	Soybean	nucleus	59.83	65.12
VIT_14s0081g00700.t01	Wine grape	cytosol	15.54	64.94
KRG95597	Soybean	nucleus	57.5	63.43
AT3G63400.4	Thale cress	nucleus	47.87	61.05
PGSC0003DMT400049782	Potato	nucleus	54.75	60.49
CDY53714	Canola	nucleus	45.8	59.89
Solyc09g065720.2.1	Tomato	nucleus	54.06	59.55
Bra040447.1-P	Field mustard	nucleus	42.78	58.79
CDX93909	Canola	nucleus	46.22	54.9
VIT_06s0004g06610.t01	Wine grape	endoplasmic reticulum	14.72	53.5
VIT_13s0084g00620.t01	Wine grape	cytosol	12.93	49.74
GSMUA_Achr5P03050_001	Banana	nucleus	46.77	48.99
VIT_03s0038g02200.t01	Wine grape	endoplasmic reticulum	14.44	47.09
TraesCS2B01G260600.1	Wheat	nucleus	40.3	46.14
HORVU2Hr1G056230.1	Barley	nucleus	39.34	46.13
VIT_13s0067g00870.t01	Wine grape	endoplasmic reticulum	14.44	46.05
TraesCS2D01G244700.1	Wheat	nucleus	40.03	45.75
TraesCS2A01G237700.1	Wheat	nucleus	39.89	45.1
EER95944	Sorghum	nucleus	38.65	43.36
Zm00001d007826_P002	Maize	nucleus	38.1	41.34
VIT_04s0008g05090.t01	Wine grape	nucleus	44.15	40.33
VIT_07s0005g02410.t01	Wine grape	plastid	14.03	40.32
Zm00001d018944_P004	Maize	nucleus	38.65	39.86
VIT_01s0146g00110.t01	Wine grape	plastid	14.31	39.69
VIT_03s0063g01030.t01	Wine grape	cytosol	19.26	38.78

Protein Annotations

EntrezGene:100251093	wikigene:100251093	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:CCB49586	ProteinID:CCB49586.1
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	UniProt:F6HBJ1	EMBL:FN595511
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130
InterPro:IPR029000	EntrezGene:LOC100251093	wikigene:LOC100251093	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF396	SUPFAM:SSF50891	SignalP:SignalP-noTM	TIGR:TC59612
TIGR:TC65618	TIGR:TC67366	UniParc:UPI0002108768	ArrayExpress:VIT_00s0179g00290	EnsemblPlantsGene:VIT_00s0179g00290	EnsemblPlants:VIT_00s0179g00290.t01
unigene:Vvi.11948	unigene:Vvi.189	RefSeq:XP_002280876	RefSeq:XP_002280876.1	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:7527990..7537710

Molecular Weight (calculated)

80283.1 Da

IEP (calculated)

11.418

GRAVY (calculated)

-1.346

Length

727 amino acids

Sequence
(BLAST)

001: MSLIGKLGFG VLWVCSNASV ASVEGREMTK KKNPLVFLDV SIDGDPVEKI VIELFADVVP KTAENFRALC TGEKGVGTST GKPLHYKGSF FHRIIKGFMA
101: QGGDFSKGNG TGGESIYGGK FADENFKRAH EGPGFLSMAN SGPNTNGSQF FMTFKRQPHL DGKHVVFGKV VQGIDTLKKI EQLGTGDGKP ARLVKIVDCG
201: ETSENKIHGA VGTEKGRKKK SGKALSSDDS SDEQARGRRR NSLKDRRKKR KRKYSSSDSY SSDTDSDSYS SDNDSASDSD SSLSDSSSSS DGRRRKRRRP
301: LKRDKHQRGK KRKDGRKDRK RGLRDKKSRH KSKWSSESSS GTDSGSTSSS RSSSDDEKAS HHVSAHKTSN STHTESKHPR NLGKKTGALE QDTITKPQKD
401: HELKMSEDDS SHEEGEFSQK NELLNNGHGT EAKSEKTAKQ HPLSDDSGKS RSLTPSPRRR AKISPRRNPS ISPKKISTMS PRYQHDSRSP ARKSGKRNQG
501: NSRSPLGSPA RKATEPPASN HGRGLSRSPS PNGAPKRIRK GRGFTDRFSF ARRYRTPSPE RSPRRSYPYG GRNVNARNRD RYSSYRSYSE RSPQRRYRSP
601: PRGRSPPRYR RRRSRSRSAS RSPGAYHGRN RVRSRSPMRS PSPTDNRPPI SERLRSRLGP QGDDQRPSDK GRFRSRSRSR GSSGSGSTEA TPQKPCGKAA
701: SVSPSRSRSS SPDGQKGLVS YGDASPV

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.