Factsheet for VIT_13s0067g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
endoplasmic reticulum 7
extracellular 4
golgi 4
plasma membrane 4
vacuole 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g06610.t01	Wine grape	endoplasmic reticulum	68.86	78.5
PGSC0003DMT400016955	Potato	endoplasmic reticulum	70.18	69.87
Solyc06g051650.2.1	Tomato	endoplasmic reticulum	68.42	69.33
Bra007200.1-P	Field mustard	endoplasmic reticulum	67.11	68.3
CDX72190	Canola	endoplasmic reticulum	67.11	68.3
CDY27255	Canola	endoplasmic reticulum	67.11	68.3
VIT_18s0001g14400.t01	Wine grape	extracellular	50.44	66.86
AT3G55920.1	Thale cress	endoplasmic reticulum	65.35	65.35
VIT_03s0038g01930.t01	Wine grape	cytosol	48.25	63.95
KRG97736	Soybean	endoplasmic reticulum	65.79	63.83
VIT_14s0081g00700.t01	Wine grape	cytosol	48.68	63.79
KRH31143	Soybean	endoplasmic reticulum	64.91	62.18
VIT_03s0038g02200.t01	Wine grape	endoplasmic reticulum	52.63	53.81
VIT_13s0084g00620.t01	Wine grape	cytosol	41.23	49.74
VIT_01s0146g00110.t01	Wine grape	plastid	50.44	43.89
VIT_07s0005g02410.t01	Wine grape	plastid	48.25	43.48
VIT_03s0063g01030.t01	Wine grape	cytosol	42.54	26.87
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	46.05	14.44
VIT_04s0008g05090.t01	Wine grape	nucleus	41.67	11.93

Protein Annotations

EntrezGene:100241683	wikigene:100241683	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:CBI25479	ProteinID:CBI25479.3
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	UniProt:D7T4P7	EMBL:FN595514
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0006457
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	EntrezGene:LOC100241683	wikigene:LOC100241683
PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF384	SUPFAM:SSF50891	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI000198458E	ArrayExpress:VIT_13s0067g00870
EnsemblPlantsGene:VIT_13s0067g00870	EnsemblPlants:VIT_13s0067g00870.t01	unigene:Vvi.8631	RefSeq:XP_002273152	RefSeq:XP_002273152.1	RefSeq:XP_002273217
RefSeq:XP_002273217.1	SEG:seg	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:D7T4P7]

Coordinates

chr13:-:497500..500769

Molecular Weight (calculated)

24644.8 Da

IEP (calculated)

9.379

GRAVY (calculated)

-0.086

Length

228 amino acids

Sequence
(BLAST)

001: MAATRRLIAV AVIWIMVLIG TLAIIQSQLS ATVSIEQKTI NTTLEKESKS KEDLDGVTHK VYFDVEVSGK PIGRITMGLF GKTVPKTIEN FRALCTGEKG
101: RGKSGKPLHY KGSAFHRIIP SFMIQGGDFT LGDGRGGESI YGERFADENF KLNHTSPGLV SMANAGPDSN GSQFFITTVA THWLDGKHVV FGKVLSGMEV
201: VYKIEELGSR NGAPTQKVVI SDSGELPL

Best Arabidopsis Sequence Match ( AT3G55920.1 )
(BLAST)

001: MAITATRLVS LTLLWIVVLF VTLALIQIKL TDVADPSVNE KILDAKLNQV GEDLEGVTHK VYFDIQINGS PAGRILIGLF GNIVPKTAEN FRSLCTGEKG
101: VGNMGKPLYF KGSSFHRIIP GFMIQGGDFT RGDGRGGESI YGDKFADENF KLKHTGPGFL SMANSGPDSN GSQFFITTVT TSWLDGHHVV FGKVLSGMEV
201: VRKIEAQGQD SGVPKANVII FASGEVSL

Arabidopsis Description

CYP21-2Peptidyl-prolyl cis-trans isomerase CYP21-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8W5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.