Factsheet for PGSC0003DMT400016955

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 8
vacuole 6
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g051650.2.1	Tomato	endoplasmic reticulum	95.63	97.33
PGSC0003DMT400078234	Potato	endoplasmic reticulum	67.25	74.4
VIT_13s0067g00870.t01	Wine grape	endoplasmic reticulum	69.87	70.18
CDX72190	Canola	endoplasmic reticulum	66.81	68.3
Bra007200.1-P	Field mustard	endoplasmic reticulum	66.38	67.86
CDY27255	Canola	endoplasmic reticulum	66.38	67.86
PGSC0003DMT400011344	Potato	cytosol	49.78	66.28
AT3G55920.1	Thale cress	endoplasmic reticulum	65.94	66.23
PGSC0003DMT400004125	Potato	extracellular	49.34	66.08
KRG97736	Soybean	endoplasmic reticulum	66.81	65.11
KRH31143	Soybean	endoplasmic reticulum	66.38	63.87
PGSC0003DMT400073838	Potato	cytosol	48.03	62.86
PGSC0003DMT400015869	Potato	cytosol	45.85	54.69
PGSC0003DMT400013826	Potato	cytosol, mitochondrion	41.92	50.53
PGSC0003DMT400013412	Potato	extracellular, plastid	50.22	46.37
PGSC0003DMT400066358	Potato	cytosol	43.67	27.62
PGSC0003DMT400026079	Potato	cytosol	40.17	25.48
PGSC0003DMT400049782	Potato	nucleus	46.29	16.11
PGSC0003DMT400059575	Potato	nucleus	12.23	4.01

Protein Annotations

EntrezGene:102602764	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	UniProt:M1A8D6
PFAM:PF00160	EnsemblPlantsGene:PGSC0003DMG400006624	PGSC:PGSC0003DMG400006624	EnsemblPlants:PGSC0003DMT400016955	PIRSF:PIRSF001467	PRINTS:PR00153
ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF384	SUPFAM:SSF50891	TMHMM:TMhelix
UniParc:UPI000295B3E0	RefSeq:XP_006338848.1	SEG:seg	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400006624]

Coordinates

chr6:-:26362145..26367373

Molecular Weight (calculated)

25031.9 Da

IEP (calculated)

9.028

GRAVY (calculated)

-0.349

Length

229 amino acids

Sequence
(BLAST)

001: MANRNKLSPF LVVWVLVLFG TLIFILNRLG NTGVSSDGKD ITIERNDEAK TSEDLERVTH KVYFDVEING KPTGRIVMGL FGKTVPKTAE NFRALCTGEK
101: GTGKAGKPLH YKGSSFHRII PSFMIQGGDF TRGDGRGGES IYGESFPDEN FDLKHTEPGI LSMANAGPDT NGSQFFITTV TTSWLDKHHV VFGKVLSGMD
201: VVHKIEAEGR QSGTPKSKVR ISNSGELPQ

Best Arabidopsis Sequence Match ( AT2G29960.1 )
(BLAST)

001: MAKASFILLG TLFLFGAIAS IQAKEDLKEV THKVYFDVEI DGKSAGRVVI GLFGKAVPKT AENFRALCTG EKGVGKSGKP LHYKGSKFHR IIPSFMIQGG
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L

Arabidopsis Description

CYP19-4Peptidyl-prolyl cis-trans isomerase CYP19-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDP4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.