Factsheet for PGSC0003DMT400066358

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108340.2.1	Tomato	cytosol	98.89	98.89
VIT_03s0063g01030.t01	Wine grape	cytosol	84.53	84.76
KRH71172	Soybean	cytosol	81.49	81.72
KRH50243	Soybean	cytosol	81.22	81.44
GSMUA_Achr8P23380_001	Banana	cytosol	79.83	74.87
TraesCS7D01G176900.1	Wheat	cytosol	77.35	74.67
TraesCS7A01G175300.1	Wheat	cytosol	77.07	73.61
HORVU7Hr1G036160.1	Barley	cytosol	77.07	73.42
TraesCS7B01G080700.1	Wheat	cytosol	77.07	73.42
EER88080	Sorghum	cytosol	78.18	72.75
Os06t0216800-01	Rice	cytosol	79.01	72.22
PGSC0003DMT400026079	Potato	cytosol	71.55	71.75
Zm00001d037189_P004	Maize	extracellular	77.07	71.72
GSMUA_Achr5P05580_001	Banana	cytosol	77.62	71.68
EES05845	Sorghum	cytosol	76.24	69.7
Os02t0761100-01	Rice	cytosol	77.07	69.23
TraesCS6A01G313700.1	Wheat	cytosol	74.86	66.75
TraesCS6D01G293100.1	Wheat	cytosol	74.86	66.42
TraesCS6B01G343800.1	Wheat	cytosol	74.59	66.18
PGSC0003DMT400004125	Potato	extracellular	28.18	59.65
PGSC0003DMT400011344	Potato	cytosol	28.18	59.3
HORVU6Hr1G077290.1	Barley	plastid	74.31	59.12
PGSC0003DMT400073838	Potato	cytosol	28.45	58.86
PGSC0003DMT400013826	Potato	cytosol, mitochondrion	26.24	50.0
PGSC0003DMT400015869	Potato	cytosol	26.24	49.48
PGSC0003DMT400078234	Potato	endoplasmic reticulum	27.9	48.79
PGSC0003DMT400016955	Potato	endoplasmic reticulum	27.62	43.67
PGSC0003DMT400013412	Potato	extracellular, plastid	27.62	40.32
PGSC0003DMT400049782	Potato	nucleus	36.19	19.91
PGSC0003DMT400059575	Potato	nucleus	13.81	7.16

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102601132	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000003	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0006457	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010050	GO:GO:0010582
GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
InterPro:IPR029000	UniProt:M1CFF7	PFAM:PF00160	PFAM:PF00515	EnsemblPlantsGene:PGSC0003DMG400025806	PGSC:PGSC0003DMG400025806
EnsemblPlants:PGSC0003DMT400066358	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50005	PFscan:PS50072	PFscan:PS50293
PANTHER:PTHR11071	PANTHER:PTHR11071:SF310	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF50891	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI000294CB94	RefSeq:XP_006346442.1	SEG:seg

Description

Peptidyl-prolyl cis-trans isomerase d, ppid [Source:PGSC_GENE;Acc:PGSC0003DMG400025806]

Coordinates

chr1:+:84758132..84763191

Molecular Weight (calculated)

40294.7 Da

IEP (calculated)

6.194

GRAVY (calculated)

-0.550

Length

362 amino acids

Sequence
(BLAST)

001: MTRPRCYLDI SIGGELEGRI VVELYNDVVP KTAENFRALC TGEKGVGPNT GVPLHYKGNC FHRVIKSFMV QGGDISAGDG TGGESIYGLK FEDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFARV IKGMGVVRSM EHVTTGENDC PTVDISIADC GEIPEGADDG ITNFFKDGDL YPDWPADLDN
201: NTDDLPWWVT ALESIKAFGN ENFKKQDYKM ALRKYRKALR YLDICWEKEG IDEDRSAYLR RMKSQIFTNS SASKLKLGDL KGALLDADFA MRDGENNAKA
301: LFRQGQAHMA LNDIDAAVES FKKALELEPN DGGIKNQLAA AKKKIADRSD KERKAFSRMF QN

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.