Factsheet for PGSC0003DMT400013412

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 11
mitochondrion 1
endoplasmic reticulum 1
extracellular 1

Predictors

GFP

MS/MS

Papers

extracellular: 24773703

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13120.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT5G13120.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009990.2.1	Tomato	plastid	96.37	96.37
VIT_01s0146g00110.t01	Wine grape	plastid	74.19	70.23
EES17522	Sorghum	plastid	69.35	69.08
KRH36359	Soybean	nucleus, plastid	68.15	67.33
Os05t0103200-01	Rice	plastid	67.74	67.2
Zm00001d011104_P001	Maize	plastid	66.94	66.94
Zm00001d035761_P001	Maize	plastid	67.74	66.93
TraesCS1A01G007500.1	Wheat	golgi	65.32	66.12
TraesCS1B01G011100.1	Wheat	plastid	64.92	65.71
KRG93128	Soybean	nucleus, plastid	66.94	65.61
TraesCS1D01G000800.2	Wheat	plastid	64.52	65.31
GSMUA_Achr2P21150_001	Banana	plastid	65.32	65.06
PGSC0003DMT400004125	Potato	extracellular	43.55	63.16
PGSC0003DMT400011344	Potato	cytosol	43.55	62.79
CDX70495	Canola	plastid	64.92	62.65
CDX78508	Canola	plastid	64.52	62.5
Bra006182.1-P	Field mustard	plastid	64.52	62.26
AT5G13120.1	Thale cress	plastid	64.52	61.78
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	64.52	59.04
PGSC0003DMT400073838	Potato	cytosol	40.73	57.71
HORVU1Hr1G000710.1	Barley	mitochondrion, plastid	64.92	57.3
PGSC0003DMT400078234	Potato	endoplasmic reticulum	44.76	53.62
PGSC0003DMT400015869	Potato	cytosol	39.52	51.04
PGSC0003DMT400016955	Potato	endoplasmic reticulum	46.37	50.22
PGSC0003DMT400013826	Potato	cytosol, mitochondrion	37.9	49.47
PGSC0003DMT400066358	Potato	cytosol	40.32	27.62
PGSC0003DMT400026079	Potato	cytosol	39.52	27.15
PGSC0003DMT400049782	Potato	nucleus	42.34	15.96
PGSC0003DMT400059575	Potato	nucleus	9.27	3.3

Protein Annotations

MapMan:1.1.8.1.4.5	EntrezGene:102602349	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	UniProt:M1A2T5	PFAM:PF00160	EnsemblPlantsGene:PGSC0003DMG400005232
PGSC:PGSC0003DMG400005232	EnsemblPlants:PGSC0003DMT400013412	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF383	SUPFAM:SSF50891	UniParc:UPI000296B246	RefSeq:XP_006363774.1	SEG:seg	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:PGSC_GENE;Acc:PGSC0003DMG400005232]

Coordinates

chr1:+:9027178..9031091

Molecular Weight (calculated)

26527.6 Da

IEP (calculated)

9.465

GRAVY (calculated)

-0.170

Length

248 amino acids

Sequence
(BLAST)

001: MAATFATVSN LGSISVPRVA NPTYAASPKL LKSSFSSSSL FGGSLRLETS SNRSVHRKTG GSSGSIQAAV EAVDLQSKVT HKVYFDISIG NPVGKLAGRI
101: VIGLYGDDVP QTAENFRALC TGEKGFGFKD SAFHRVIKDF MIQGGDFDKG NGTGGKSIYG RTFKDENFKL VHTGPGIVSM ANAGPNTNGS QFFICTVKTP
201: WLDQKHVVFG QVLEGMDIVK LIECQETDRG DRPRKRVVIS DCGELPIA

Best Arabidopsis Sequence Match ( AT5G13120.1 )
(BLAST)

001: MATLSMTLSN PKSLSAPPRR LSPINTSAFT STSFRLRTKS SFDSISFSSS TPFSASSLLL HTSYTKRNHR CFSVQSNAEV VTEPQSKITH KVYFDISVGN
101: PVGKLAGRIV IGLYGDDVPQ TVENFRALCT GEKGFGYKGS TFHRVIRDFM IQGGDFEKGN GTGGKSVYGR TFKDENFKLS HVGPGVLSMA NAGPNTNGSQ
201: FFICTIKTSW LDGRHVVFGQ VIEGMEVVKL IEEQETDRGD RPRKKVVIAD CGQLPMSEA

Arabidopsis Description

PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.