Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
16481623
plastid: 16595579 plastid: 18071923 plastid: 18419817 plastid: 28542341 |
msms PMID:
18419817
doi
Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.
msms PMID:
28542341
doi
National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.
msms PMID:
18071923
doi
Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G007500.1 | Wheat | golgi | 96.73 | 96.73 |
| TraesCS1B01G011100.1 | Wheat | plastid | 96.33 | 96.33 |
| HORVU1Hr1G000710.1 | Barley | mitochondrion, plastid | 95.1 | 82.92 |
| Zm00001d011104_P001 | Maize | plastid | 82.45 | 81.45 |
| Os05t0103200-01 | Rice | plastid | 82.86 | 81.2 |
| EES17522 | Sorghum | plastid | 82.45 | 81.12 |
| Zm00001d035761_P001 | Maize | plastid | 82.45 | 80.48 |
| GSMUA_Achr2P21150_001 | Banana | plastid | 71.02 | 69.88 |
| Solyc01g009990.2.1 | Tomato | plastid | 65.71 | 64.92 |
| PGSC0003DMT400013412 | Potato | extracellular, plastid | 65.31 | 64.52 |
| KRH36359 | Soybean | nucleus, plastid | 65.71 | 64.14 |
| KRG93128 | Soybean | nucleus, plastid | 65.71 | 63.64 |
| VIT_01s0146g00110.t01 | Wine grape | plastid | 67.76 | 63.36 |
| TraesCS6D01G066700.1 | Wheat | golgi, plastid | 43.27 | 61.99 |
| Bra006182.1-P | Field mustard | plastid | 64.49 | 61.48 |
| CDX78508 | Canola | plastid | 64.08 | 61.33 |
| CDX70495 | Canola | plastid | 64.08 | 61.09 |
| AT5G13120.1 | Thale cress | plastid | 62.86 | 59.46 |
| GSMUA_Achr6P16580_001 | Banana | endoplasmic reticulum, mitochondrion | 65.71 | 59.41 |
| TraesCS4D01G001600.1 | Wheat | mitochondrion | 42.04 | 57.54 |
| TraesCS3D01G159000.1 | Wheat | plastid | 51.84 | 52.92 |
| TraesCS7D01G403300.2 | Wheat | mitochondrion | 46.12 | 51.83 |
| TraesCS5D01G334800.2 | Wheat | endoplasmic reticulum | 43.67 | 49.54 |
| TraesCS5D01G479900.1 | Wheat | nucleus | 39.59 | 48.99 |
| TraesCS7D01G176900.1 | Wheat | cytosol | 42.45 | 27.73 |
| TraesCS6D01G293100.1 | Wheat | cytosol | 42.86 | 25.74 |
| TraesCS2D01G244700.1 | Wheat | nucleus | 35.92 | 13.84 |
| TraesCS6D01G167200.3 | Wheat | cytosol | 33.47 | 9.66 |
Protein Annotations
| MapMan:1.1.8.1.4.5 | MapMan:18.12.1 | Gene3D:2.40.100.10 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS |
| InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006457 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR002130 |
| InterPro:IPR029000 | PFAM:PF00160 | PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 |
| PANTHER:PTHR11071 | PANTHER:PTHR11071:SF383 | SUPFAM:SSF50891 | EnsemblPlantsGene:TraesCS1D01G000800 | EnsemblPlants:TraesCS1D01G000800.2 | TIGR:cd01926 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:216893..219327
Molecular Weight (calculated)
25908.9 Da
IEP (calculated)
9.840
GRAVY (calculated)
-0.124
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAATSSFAT LAIARPAASG AAAQRALLAS KVPSSALSLR GGRVASPALS VSQQSRARFV ASASAEPYAP ELQSKVTNKV YFDISIGNPV GKNVGRIVIG
101: LYGDDVPQTV ENFRALCAGE KGFGYKGSSF HRVIKDFMIQ GGDFDKGNGT GGKSIYGRTF KDENFQLVHT GPGVLSMANA GPNTNGSQFF ICTMKTPWLD
201: GRHVVFGQVL EGMDIVRTIE SSETDRGDRP KKKVVISECG ELPVV
101: LYGDDVPQTV ENFRALCAGE KGFGYKGSSF HRVIKDFMIQ GGDFDKGNGT GGKSIYGRTF KDENFQLVHT GPGVLSMANA GPNTNGSQFF ICTMKTPWLD
201: GRHVVFGQVL EGMDIVRTIE SSETDRGDRP KKKVVISECG ELPVV
001: MATLSMTLSL SAPPRRLSPI NTSAFTSTSF RLRTKSSFDS ISFSSSTPFS ASSLLLHTSY TKRNHRCFSV QSNAEVVTEP QSKITHKVYF DISVGNPVGK
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA
Arabidopsis Description
PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.