Factsheet for TraesCS3D01G159000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G178000.1	Wheat	plastid	98.33	98.33
TraesCS3A01G151100.1	Wheat	plastid	98.33	98.33
HORVU3Hr1G030750.1	Barley	plastid	94.58	94.58
EES00602	Sorghum	plastid	77.5	76.86
Zm00001d008209_P001	Maize	plastid	77.5	66.19
VIT_07s0005g02410.t01	Wine grape	plastid	61.67	58.5
TraesCS6D01G066700.1	Wheat	golgi, plastid	41.67	58.48
KRG96627	Soybean	nucleus, plastid	61.67	56.92
CDX76611	Canola	plastid	59.17	56.13
TraesCS4D01G001600.1	Wheat	mitochondrion	41.67	55.87
KRH33684	Soybean	nucleus, plastid	59.17	53.99
CDY11395	Canola	plastid	57.92	53.88
CDY58761	Canola	plastid	57.92	53.88
Bra007655.1-P	Field mustard	plastid	57.5	53.7
CDX93994	Canola	plastid	58.33	53.64
Bra014414.1-P	Field mustard	plastid	56.67	52.71
TraesCS1D01G000800.2	Wheat	plastid	52.92	51.84
TraesCS7D01G403300.2	Wheat	mitochondrion	46.25	50.92
KRH68358	Soybean	plastid	50.0	50.85
TraesCS5D01G479900.1	Wheat	nucleus	39.17	47.47
TraesCS5D01G334800.2	Wheat	endoplasmic reticulum	41.25	45.83
AT3G62030.2	Thale cress	endoplasmic reticulum	59.17	45.37
TraesCS7D01G176900.1	Wheat	cytosol	40.83	26.13
TraesCS6D01G293100.1	Wheat	cytosol	41.67	24.51
TraesCS2D01G244700.1	Wheat	nucleus	37.5	14.15
TraesCS6D01G167200.3	Wheat	cytosol	35.0	9.89

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF383	SUPFAM:SSF50891	EnsemblPlantsGene:TraesCS3D01G159000	EnsemblPlants:TraesCS3D01G159000.1	TIGR:cd01926	SEG:seg

Description

No Description!

Coordinates

chr3D:+:128439504..128445646

Molecular Weight (calculated)

25699.6 Da

IEP (calculated)

7.889

GRAVY (calculated)

-0.196

Length

240 amino acids

Sequence
(BLAST)

001: MACRPAVSNP SALTPAPRRC VVPGRSSTRG RVDCPLRSSS AGAVRLGARR APAAAFVVRA AAAEGDLDLQ AKVTSKCFFD VEIGGERAGK VVIGLFGEVV
101: PKTVDNFRAL CTGDKGYGYK GCSFHRIIKD FMIQGGDFQN NNGTGGRSIY GECFDDENFT LKHVGPGVLS MANAGPDTNG SQFFICTVKT PWLDNRHVVF
201: GHVLEGMDVV RELESQETSR SDIPKQPCRI VDCGELPLDG

Best Arabidopsis Sequence Match ( AT3G62030.3 )
(BLAST)

001: MASSSSMQMV HTSRSIAQIG FGVKSQLVSA NRTTQSVCFG ARSSGIALSS RLHYASPIKQ FSGVYATTKH QRTACVKSMA AEEEVIEPQA KVTNKVYFDV
101: EIGGEVAGRI VMGLFGEVVP KTVENFRALC TGEKKYGYKG SSFHRIIKDF MIQGGDFTEG NGTGGISIYG AKFEDENFTL KHTGPGILSM ANAGPNTNGS
201: QFFICTVKTS WLDNKHVVFG QVIEGMKLVR TLESQETRAF DVPKKGCRIY ACGELPLDA

Arabidopsis Description

ROC4Rotamase CYP 4 [Source:UniProtKB/TrEMBL;Acc:F4IX26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.