Factsheet for Bra014414.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 2
endoplasmic reticulum 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58761	Canola	plastid	98.06	98.06
Bra007655.1-P	Field mustard	plastid	83.72	84.05
AT3G62030.2	Thale cress	endoplasmic reticulum	84.88	69.97
Bra037296.1-P	Field mustard	cytosol	43.02	64.91
Bra033574.1-P	Field mustard	cytosol	42.64	63.95
Bra010728.1-P	Field mustard	cytosol	42.25	63.37
VIT_07s0005g02410.t01	Wine grape	plastid	59.3	60.47
Bra011568.1-P	Field mustard	cytosol	39.92	60.23
EES00602	Sorghum	plastid	56.2	59.92
Bra007214.1-P	Field mustard	cytosol	42.25	59.89
Bra006748.1-P	Field mustard	endoplasmic reticulum	44.96	57.71
Bra002623.1-P	Field mustard	cytosol	43.8	57.65
TraesCS3D01G159000.1	Wheat	plastid	52.71	56.67
TraesCS3B01G178000.1	Wheat	plastid	52.71	56.67
TraesCS3A01G151100.1	Wheat	plastid	52.71	56.67
KRG96627	Soybean	nucleus, plastid	56.98	56.54
Bra018353.1-P	Field mustard	endoplasmic reticulum	43.41	55.72
HORVU3Hr1G030750.1	Barley	plastid	51.55	55.42
KRH33684	Soybean	nucleus, plastid	54.65	53.61
Bra006182.1-P	Field mustard	plastid	51.55	51.75
KRH68358	Soybean	plastid	46.9	51.27
Zm00001d008209_P001	Maize	plastid	55.04	50.53
Bra007200.1-P	Field mustard	endoplasmic reticulum	43.41	50.0
Bra005088.1-P	Field mustard	plastid	37.6	47.55
Bra017105.1-P	Field mustard	plastid	37.6	46.86
Bra011574.1-P	Field mustard	endoplasmic reticulum	37.21	42.86
Bra034667.1-P	Field mustard	endoplasmic reticulum	36.82	42.6
Bra015237.1-P	Field mustard	cytosol	37.6	26.87
Bra040447.1-P	Field mustard	nucleus	36.43	17.77
Bra011346.1-P	Field mustard	nucleus	29.46	9.84

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EnsemblPlantsGene:Bra014414	EnsemblPlants:Bra014414.1	EnsemblPlants:Bra014414.1-P	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	UniProt:M4DD46	PFAM:PF00160
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383	SUPFAM:SSF50891
UniParc:UPI0002543831	SEG:seg	:	:	:	:

Description

AT3G62030 (E=9e-099) ROC4 | peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)

Coordinates

chrA04:-:400842..402143

Molecular Weight (calculated)

27969.4 Da

IEP (calculated)

8.712

GRAVY (calculated)

-0.271

Length

258 amino acids

Sequence
(BLAST)

001: MASSSPSQMV HTSRTISQIG VRSQLVSANR TPQSLSFGAR SSLSSRLNYA TSFPLKTISG AHKLQRTACV KSVAAEEEEE EEVLAPPQAK VTHKAYFDVE
101: IGGEVAGRIG MGLLGDVVPR TVENFRALCT GEKKYGYKGS SFHRIIKDFM IQGGDFTEGN GTGGISIYGA KFEDENFTLK HTGPGILSMA NAGPNTNGSQ
201: FFICTIKTSW LDNKHVVFGQ VIEGMKLVRK LESQETRAMD VPKKACRIYA CGELSMDA

Best Arabidopsis Sequence Match ( AT3G62030.1 )
(BLAST)

001: MASSSSMQMV HTSRSIAQIG FGVKSQLVSA NRTTQSVCFG ARSSGIALSS RLHYASPIKQ FSGVYATTKH QRTACVKSMA AEEEEVIEPQ AKVTNKVYFD
101: VEIGGEVAGR IVMGLFGEVV PKTVENFRAL CTGEKKYGYK GSSFHRIIKD FMIQGGDFTE GNGTGGISIY GAKFEDENFT LKHTGPGILS MANAGPNTNG
201: SQFFICTVKT SWLDNKHVVF GQVIEGMKLV RTLESQETRA FDVPKKGCRI YACGELPLDA

Arabidopsis Description

ROC4Rotamase CYP 4 [Source:UniProtKB/TrEMBL;Acc:F4IX26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.