Factsheet for Bra010728.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12100	Canola	cytosol	100.0	100.0
CDX90292	Canola	cytosol	100.0	100.0
AT4G38740.1	Thale cress	cytosol	93.02	93.02
Bra033574.1-P	Field mustard	cytosol	91.86	91.86
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	87.79	87.79
KRH51416	Soybean	cytosol	87.21	87.21
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	86.05	86.05
KRH29120	Soybean	endoplasmic reticulum, nucleus	84.3	84.3
Zm00001d050635_P001	Maize	plastid	83.72	84.21
VIT_18s0001g14400.t01	Wine grape	extracellular	83.72	83.72
Bra011568.1-P	Field mustard	cytosol	83.14	83.63
Zm00001d016660_P001	Maize	cytosol	83.14	83.14
Zm00001d016661_P001	Maize	plastid	83.14	83.14
PGSC0003DMT400011344	Potato	cytosol	83.14	83.14
Solyc10g054910.1.1	Tomato	extracellular, unclear	83.14	83.14
TraesCS6B01G093100.2	Wheat	cytosol	82.56	83.04
PGSC0003DMT400004125	Potato	extracellular	81.98	82.46
TraesCS6D01G066700.1	Wheat	golgi, plastid	81.98	82.46
TraesCS6A01G068900.1	Wheat	cytosol	81.98	82.46
EES05164	Sorghum	cytosol	81.98	81.98
Solyc01g111170.2.1	Tomato	extracellular, nucleus	81.4	81.87
Bra037296.1-P	Field mustard	cytosol	81.4	81.87
EES04388	Sorghum	cytosol	81.4	81.87
Os02t0121300-01	Rice	extracellular	80.81	80.81
VIT_03s0038g01930.t01	Wine grape	cytosol	80.23	80.23
TraesCS6A01G405900.1	Wheat	cytosol	70.93	73.05
Bra007214.1-P	Field mustard	cytosol	73.84	69.78
HORVU6Hr1G012570.2	Barley	cytosol	83.14	69.42
HORVU6Hr1G092950.1	Barley	endoplasmic reticulum, golgi	73.84	67.2
Bra002623.1-P	Field mustard	cytosol	70.35	61.73
Bra006748.1-P	Field mustard	endoplasmic reticulum	71.51	61.19
Bra018353.1-P	Field mustard	endoplasmic reticulum	69.77	59.7
TraesCS6B01G450300.1	Wheat	cytosol	69.19	54.34
TraesCS6B01G450400.1	Wheat	cytosol	66.28	52.05
TraesCS6A01G405800.1	Wheat	cytosol	73.26	51.01
Bra007200.1-P	Field mustard	endoplasmic reticulum	66.28	50.89
Bra005088.1-P	Field mustard	plastid	58.14	49.02
Bra017105.1-P	Field mustard	plastid	57.56	47.83
Bra011574.1-P	Field mustard	endoplasmic reticulum	58.72	45.09
Bra006182.1-P	Field mustard	plastid	65.7	43.97
Bra034667.1-P	Field mustard	endoplasmic reticulum	55.81	43.05
Bra007655.1-P	Field mustard	plastid	63.95	42.8
Bra014414.1-P	Field mustard	plastid	63.37	42.25
Bra015237.1-P	Field mustard	cytosol	60.47	28.81
Bra040447.1-P	Field mustard	nucleus	63.37	20.6
Bra011346.1-P	Field mustard	nucleus	49.42	11.01

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EnsemblPlantsGene:Bra010728	EnsemblPlants:Bra010728.1	EnsemblPlants:Bra010728.1-P	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0001932	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006457	GO:GO:0006464	GO:GO:0007154
GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009585
GO:GO:0009605	GO:GO:0009628	GO:GO:0009704	GO:GO:0009719	GO:GO:0009735	GO:GO:0009742
GO:GO:0009785	GO:GO:0009791	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538
GO:GO:0046686	GO:GO:0048046	InterPro:IPR002130	InterPro:IPR029000	UniProt:M4D2M5	PFAM:PF00160
PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF382
SUPFAM:SSF50891	UniParc:UPI0001890A67	SEG:seg	:	:	:

Description

AT4G38740 (E=4e-085) ROC1 | ROC1 (ROTAMASE CYP 1); peptidyl-prolyl cis-trans isomerase

Coordinates

chrA08:+:16152436..16152954

Molecular Weight (calculated)

18311.9 Da

IEP (calculated)

8.333

GRAVY (calculated)

-0.241

Length

172 amino acids

Sequence
(BLAST)

001: MAFPKVFFDM TVDGKPAGRI VMELYTDKTP KTAENFRALC TGEKGVGSKG KPLHFKGSSF HRVIPNFMCQ GGDFTAGNGT GGESIYGEKF ADENFERKHT
101: GPGILSMANA GPNTNGSQFF ICTVKTDWLD GKHVVFGQVV EGLDVVKAIE KVGSASGKPS KPVVVADCGQ LS

Best Arabidopsis Sequence Match ( AT4G38740.1 )
(BLAST)

001: MAFPKVYFDM TIDGQPAGRI VMELYTDKTP RTAENFRALC TGEKGVGGTG KPLHFKGSKF HRVIPNFMCQ GGDFTAGNGT GGESIYGSKF EDENFERKHT
101: GPGILSMANA GANTNGSQFF ICTVKTDWLD GKHVVFGQVV EGLDVVKAIE KVGSSSGKPT KPVVVADCGQ LS

Arabidopsis Description

CYP18-3Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178V2S8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.