Subcellular Localization
min:
: max
Winner_takes_all: nucleus, endoplasmic reticulum, mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 mitochondrion: 27780359 endoplasmic reticulum: 28499913 mitochondrion: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
27780359
doi
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29120 | Soybean | endoplasmic reticulum, nucleus | 93.02 | 93.02 |
| KRH51416 | Soybean | cytosol | 92.44 | 92.44 |
| KRH60719 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 91.86 | 91.86 |
| VIT_18s0001g14400.t01 | Wine grape | extracellular | 87.21 | 87.21 |
| Solyc01g111170.2.1 | Tomato | extracellular, nucleus | 86.63 | 87.13 |
| Solyc10g054910.1.1 | Tomato | extracellular, unclear | 86.63 | 86.63 |
| PGSC0003DMT400011344 | Potato | cytosol | 86.63 | 86.63 |
| PGSC0003DMT400004125 | Potato | extracellular | 86.05 | 86.55 |
| GSMUA_Achr3P12630_001 | Banana | plasma membrane, unclear | 75.58 | 86.09 |
| CDX90292 | Canola | cytosol | 86.05 | 86.05 |
| CDY12100 | Canola | cytosol | 86.05 | 86.05 |
| Bra010728.1-P | Field mustard | cytosol | 86.05 | 86.05 |
| AT4G38740.1 | Thale cress | cytosol | 85.47 | 85.47 |
| CDX72741 | Canola | cytosol | 84.3 | 84.3 |
| CDY22414 | Canola | cytosol, extracellular | 83.72 | 83.72 |
| Bra033574.1-P | Field mustard | cytosol | 83.72 | 83.72 |
| AT2G21130.1 | Thale cress | cytosol | 84.3 | 83.33 |
| Zm00001d050635_P001 | Maize | plastid | 82.56 | 83.04 |
| TraesCS6B01G093100.2 | Wheat | cytosol | 81.98 | 82.46 |
| EES04388 | Sorghum | cytosol | 81.98 | 82.46 |
| Os02t0121300-01 | Rice | extracellular | 81.98 | 81.98 |
| Zm00001d016660_P001 | Maize | cytosol | 81.98 | 81.98 |
| Zm00001d016661_P001 | Maize | plastid | 81.98 | 81.98 |
| TraesCS6A01G068900.1 | Wheat | cytosol | 81.4 | 81.87 |
| TraesCS6D01G066700.1 | Wheat | golgi, plastid | 81.4 | 81.87 |
| EES05164 | Sorghum | cytosol | 81.4 | 81.4 |
| KRG97056 | Soybean | cytosol | 79.07 | 77.71 |
| KRH68802 | Soybean | cytosol | 77.33 | 76.0 |
| TraesCS6A01G405900.1 | Wheat | cytosol | 73.26 | 75.45 |
| HORVU6Hr1G012570.2 | Barley | cytosol | 81.98 | 68.45 |
| HORVU6Hr1G092950.1 | Barley | endoplasmic reticulum, golgi | 74.42 | 67.72 |
| KRG98290 | Soybean | endoplasmic reticulum | 70.35 | 59.31 |
| KRH30309 | Soybean | endoplasmic reticulum | 69.19 | 58.33 |
| KRH13330 | Soybean | endoplasmic reticulum, nucleus | 58.72 | 55.8 |
| TraesCS6B01G450300.1 | Wheat | cytosol | 70.93 | 55.71 |
| TraesCS6B01G450400.1 | Wheat | cytosol | 68.6 | 53.88 |
| KRH20677 | Soybean | cytosol | 55.81 | 52.46 |
| KRH37809 | Soybean | nucleus | 58.72 | 52.06 |
| TraesCS6A01G405800.1 | Wheat | cytosol | 74.42 | 51.82 |
| KRH31143 | Soybean | endoplasmic reticulum | 68.6 | 49.58 |
| KRG97736 | Soybean | endoplasmic reticulum | 66.86 | 48.94 |
| KRG93128 | Soybean | nucleus, plastid | 64.53 | 43.87 |
| KRH36359 | Soybean | nucleus, plastid | 62.79 | 43.03 |
| KRH60706 | Soybean | endoplasmic reticulum | 56.98 | 42.24 |
| KRG96627 | Soybean | nucleus, plastid | 61.63 | 40.77 |
| KRH24294 | Soybean | endoplasmic reticulum | 55.81 | 40.68 |
| KRH29272 | Soybean | endoplasmic reticulum | 55.81 | 40.68 |
| KRH33684 | Soybean | nucleus, plastid | 61.05 | 39.92 |
| KRH68358 | Soybean | plastid | 51.74 | 37.71 |
| KRH04660 | Soybean | cytosol, nucleus | 64.53 | 30.83 |
| KRH50243 | Soybean | cytosol | 63.37 | 30.19 |
| KRH57738 | Soybean | cytosol, nucleus | 62.79 | 30.0 |
| KRH71172 | Soybean | cytosol | 61.63 | 29.36 |
| KRG95597 | Soybean | nucleus | 66.86 | 17.45 |
| KRH67275 | Soybean | nucleus | 67.44 | 17.37 |
| KRH61803 | Soybean | nucleus | 52.91 | 10.79 |
| KRH15996 | Soybean | nucleus | 52.33 | 10.6 |
| KRH52477 | Soybean | nucleus | 52.33 | 10.59 |
Protein Annotations
| EntrezGene:106795232 | MapMan:18.12.1 | Gene3D:2.40.100.10 | UniProt:A0A0R0H9T5 | EMBL:ACUP02007171 | InterPro:Cyclophilin-like_dom_sf |
| InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | EnsemblPlantsGene:GLYMA_12G024700 | GO:GO:0000413 | GO:GO:0003674 |
| GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR002130 | InterPro:IPR029000 | EnsemblPlants:KRH24153 |
| ProteinID:KRH24153 | ProteinID:KRH24153.1 | PFAM:PF00160 | PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 |
| PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF382 | SUPFAM:SSF50891 | UniParc:UPI000189D797 | SEG:seg |
Description
hypothetical protein
Coordinates
chr12:+:1807036..1808259
Molecular Weight (calculated)
18127.6 Da
IEP (calculated)
7.966
GRAVY (calculated)
-0.208
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MPNPKVFFDM TIGGQPAGRI VMELYADVTP STAENFRALC TGEKGAGRSG KPLHYKGSSF HRVIPNFMCQ GGDFTAGNGT GGESIYGAKF ADENFVKKHT
101: GPGILSMANA GPGTNGSQFF ICTTKTEWLD GKHVVFGQVV EGMDVVKEIE KVGSSSGRTA KPVVVADCGQ LS
101: GPGILSMANA GPGTNGSQFF ICTTKTEWLD GKHVVFGQVV EGMDVVKEIE KVGSSSGRTA KPVVVADCGQ LS
001: MATNPKVYFD MTVGGKSAGR IVMELYADTT PETAENFRAL CTGERGIGKQ GKPLHYKGSS FHRVIPKFMC QGGDFTAGNG TGGESIYGSK FKDENFIKKH
101: TGPGILSMAN AGANTNGSQF FICTEKTSWL DGKHVVFGQV VEGLNVVRDI EKVGSDSGRT SKPVVIADCG QIS
101: TGPGILSMAN AGANTNGSQF FICTEKTSWL DGKHVVFGQV VEGLNVVRDI EKVGSDSGRT SKPVVIADCG QIS
Arabidopsis Description
CYP19-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVJ7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.