CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11
extracellular 1
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68358	Soybean	plastid	80.0	88.14
KRH33684	Soybean	nucleus, plastid	77.31	76.43
VIT_07s0005g02410.t01	Wine grape	plastid	67.69	69.57
EES00602	Sorghum	plastid	61.92	66.53
TraesCS3B01G178000.1	Wheat	plastid	56.92	61.67
TraesCS3D01G159000.1	Wheat	plastid	56.92	61.67
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	40.77	61.63
KRH29120	Soybean	endoplasmic reticulum, nucleus	40.77	61.63
CDX76611	Canola	plastid	59.62	61.26
TraesCS3A01G151100.1	Wheat	plastid	56.15	60.83
HORVU3Hr1G030750.1	Barley	plastid	56.15	60.83
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	39.62	59.88
CDY11395	Canola	plastid	59.23	59.69
Bra007655.1-P	Field mustard	plastid	58.85	59.53
KRH51416	Soybean	cytosol	39.23	59.3
CDX93994	Canola	plastid	58.85	58.62
CDY58761	Canola	plastid	57.69	58.14
KRG97056	Soybean	cytosol	38.46	57.14
KRH68802	Soybean	cytosol	38.46	57.14
Bra014414.1-P	Field mustard	plastid	56.54	56.98
KRG98290	Soybean	endoplasmic reticulum	44.23	56.37
KRH30309	Soybean	endoplasmic reticulum	43.85	55.88
Zm00001d008209_P001	Maize	plastid	59.23	54.8
KRG93128	Soybean	nucleus, plastid	51.92	53.36
KRH36359	Soybean	nucleus, plastid	50.38	52.19
KRH13330	Soybean	endoplasmic reticulum, nucleus	35.0	50.28
AT3G62030.2	Thale cress	endoplasmic reticulum	60.0	49.84
KRH37809	Soybean	nucleus	36.15	48.45
KRH20677	Soybean	cytosol	33.85	48.09
KRH31143	Soybean	endoplasmic reticulum	43.08	47.06
KRG97736	Soybean	endoplasmic reticulum	42.31	46.81
KRH60706	Soybean	endoplasmic reticulum	38.85	43.53
KRH29272	Soybean	endoplasmic reticulum	37.69	41.53
KRH24294	Soybean	endoplasmic reticulum	36.54	40.25
KRH57738	Soybean	cytosol, nucleus	38.85	28.06
KRH50243	Soybean	cytosol	38.08	27.42
KRH04660	Soybean	cytosol, nucleus	37.69	27.22
KRH71172	Soybean	cytosol	37.69	27.15
KRG95597	Soybean	nucleus	39.62	15.63
KRH67275	Soybean	nucleus	38.46	14.97
KRH61803	Soybean	nucleus	31.92	9.85
KRH15996	Soybean	nucleus	31.92	9.78
KRH52477	Soybean	nucleus	31.92	9.76

Protein Annotations

EntrezGene:100785805	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02012162	EMBL:BT097857	UniProt:C6TJK9
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_19G222600	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000
EnsemblPlants:KRG96627	ProteinID:KRG96627	ProteinID:KRG96627.1	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383	SUPFAM:SSF50891	UniParc:UPI0001890A6B	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:47480412..47483082

Molecular Weight (calculated)

28322.9 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.197

Length

260 amino acids

Sequence
(BLAST)

001: MASPLSAQLV QCQNSLPPLQ GNFSQDVSKV QRSRVVCYGT RSPLGYYGKA LTSRSHNALR FSVTRQSEAR SIGYRRMTCV NAADNVVELQ AKVTTKCFFD
101: VEVGGEPVGR IVLGLFGEVV PKTVENFRAL CTGEKGYGYK GSSFHRIIKD FMIQGGDFTE GNGTGGISIY GPSFKDESFA LKHVGPGVLS MANAGPNTNG
201: SQFFICTVKT PWLDNRHVVF GHIIDGMDVV KTLESQETSR LDVPRKPCRI VNCGELPIEG

Best Arabidopsis Sequence Match ( AT3G62030.3 )
(BLAST)

001: MASSSSMQMV HTSRSIAQIG FGVKSQLVSA NRTTQSVCFG ARSSGIALSS RLHYASPIKQ FSGVYATTKH QRTACVKSMA AEEEVIEPQA KVTNKVYFDV
101: EIGGEVAGRI VMGLFGEVVP KTVENFRALC TGEKKYGYKG SSFHRIIKDF MIQGGDFTEG NGTGGISIYG AKFEDENFTL KHTGPGILSM ANAGPNTNGS
201: QFFICTVKTS WLDNKHVVFG QVIEGMKLVR TLESQETRAF DVPKKGCRIY ACGELPLDA

Arabidopsis Description

ROC4Rotamase CYP 4 [Source:UniProtKB/TrEMBL;Acc:F4IX26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.