CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11395	Canola	plastid	97.23	95.35
CDX93994	Canola	plastid	88.14	85.44
CDY58761	Canola	plastid	86.56	84.88
AT3G62030.2	Thale cress	endoplasmic reticulum	92.89	75.08
CDY22414	Canola	cytosol, extracellular	43.87	64.53
CDX72741	Canola	cytosol	43.87	64.53
CDY47469	Canola	cytosol	43.48	64.33
CDY12100	Canola	cytosol	43.48	63.95
CDX90292	Canola	cytosol	43.48	63.95
CDY26779	Canola	cytosol	43.08	63.74
VIT_07s0005g02410.t01	Wine grape	plastid	61.66	61.66
EES00602	Sorghum	plastid	57.71	60.33
CDY27248	Canola	cytosol	43.08	59.89
KRG96627	Soybean	nucleus, plastid	61.26	59.62
CDX69094	Canola	cytosol	40.32	59.3
TraesCS3D01G159000.1	Wheat	plastid	56.13	59.17
CDX72175	Canola	cytosol	42.69	59.02
TraesCS3B01G178000.1	Wheat	plastid	55.73	58.75
CDX71155	Canola	endoplasmic reticulum	46.64	58.71
TraesCS3A01G151100.1	Wheat	plastid	55.34	58.33
CDY61026	Canola	endoplasmic reticulum	46.25	58.21
HORVU3Hr1G030750.1	Barley	plastid	54.94	57.92
CDX80340	Canola	endoplasmic reticulum	46.25	57.35
CDY52123	Canola	endoplasmic reticulum	46.25	57.35
KRH33684	Soybean	nucleus, plastid	59.29	57.03
CDY55458	Canola	endoplasmic reticulum	44.66	56.22
CDY58941	Canola	endoplasmic reticulum	44.66	56.22
KRH68358	Soybean	plastid	49.8	53.39
CDX78508	Canola	plastid	52.57	51.95
CDX70495	Canola	plastid	52.17	51.36
Zm00001d008209_P001	Maize	plastid	56.13	50.53
CDX72190	Canola	endoplasmic reticulum	43.87	49.55
CDY27255	Canola	endoplasmic reticulum	43.48	49.11
CDX91486	Canola	cytosol	37.94	48.0
CDX74892	Canola	cytosol, plastid	38.34	47.55
CDX93307	Canola	plastid	37.94	46.83
CDY18371	Canola	cytosol, plastid	37.94	46.38
CDX75476	Canola	endoplasmic reticulum	37.94	42.86
CDX69100	Canola	endoplasmic reticulum	37.94	42.86
CDX76307	Canola	endoplasmic reticulum	36.76	41.7
CDY17501	Canola	endoplasmic reticulum	36.36	40.89
CDY36653	Canola	cytosol	38.34	26.87
CDX71247	Canola	cytosol	38.34	26.87
CDY53714	Canola	nucleus	37.94	17.27
CDX93909	Canola	nucleus	37.94	15.69
CDX68845	Canola	nucleus	31.23	10.33
CDX75243	Canola	nucleus	30.83	10.2

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078CHB8	EnsemblPlants:CDX76611	ProteinID:CDX76611	ProteinID:CDX76611.1
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00127069001	InterPro:IPR002130	InterPro:IPR029000	PFAM:PF00160
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383	SUPFAM:SSF50891
UniParc:UPI0004EDCD4F	SEG:seg	:	:	:	:

Description

BnaC08g31970D

Coordinates

chrLK031808:+:188169..189626

Molecular Weight (calculated)

27428.9 Da

IEP (calculated)

8.697

GRAVY (calculated)

-0.183

Length

253 amino acids

Sequence
(BLAST)

001: MASLSSMQMV HTSQIGVKSQ LVSSANRTSQ SVSSGSALSS RLHYAASFPL KKHFSGAYAT IKNQRTACVK SMAAEEEEVI EPQAKVTNKV YFDVEIGGEV
101: AGKIVMGLFG DVVPKTVENF RVLCTGEKKY GYKGSSFHRI IKDFMIQGGD FTEGNGTGGI SIYGAKFEDE NFTLKHTGPG ILSMANAGPN TNGSQFFICT
201: VKTPWLDNKH VVFGQVIEGM KLVRTLESQE TRAFDVPKKG CRIYACGELP LDA

Best Arabidopsis Sequence Match ( AT3G62030.1 )
(BLAST)

001: MASSSSMQMV HTSRSIAQIG FGVKSQLVSA NRTTQSVCFG ARSSGIALSS RLHYASPIKQ FSGVYATTKH QRTACVKSMA AEEEEVIEPQ AKVTNKVYFD
101: VEIGGEVAGR IVMGLFGEVV PKTVENFRAL CTGEKKYGYK GSSFHRIIKD FMIQGGDFTE GNGTGGISIY GAKFEDENFT LKHTGPGILS MANAGPNTNG
201: SQFFICTVKT SWLDNKHVVF GQVIEGMKLV RTLESQETRA FDVPKKGCRI YACGELPLDA

Arabidopsis Description

ROC4Rotamase CYP 4 [Source:UniProtKB/TrEMBL;Acc:F4IX26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.