Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G56070.1 | CDX73678 | AT3G51920.1 | 17360592 |
| AT3G56070.1 | CDX95314 | AT3G51920.1 | 17360592 |
| AT3G56070.1 | CDY23174 | AT3G51920.1 | 17360592 |
| AT3G56070.1 | CDX92401 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27248 | Canola | cytosol | 95.63 | 96.15 |
| AT3G56070.1 | Thale cress | cytosol | 86.89 | 90.34 |
| VIT_14s0081g00700.t01 | Wine grape | cytosol | 77.6 | 81.61 |
| KRG97056 | Soybean | cytosol | 77.6 | 81.14 |
| EER96387 | Sorghum | cytosol | 77.05 | 80.57 |
| KRH68802 | Soybean | cytosol | 77.05 | 80.57 |
| PGSC0003DMT400073838 | Potato | cytosol | 76.5 | 80.0 |
| Solyc11g006070.1.1 | Tomato | cytosol, extracellular, unclear | 65.57 | 78.43 |
| Os09t0571400-01 | Rice | mitochondrion | 75.41 | 77.09 |
| TraesCS4D01G001600.1 | Wheat | mitochondrion | 75.41 | 77.09 |
| TraesCS4A01G312600.1 | Wheat | cytosol, mitochondrion, plastid | 74.86 | 76.11 |
| CDY47469 | Canola | cytosol | 69.4 | 74.27 |
| CDX72741 | Canola | cytosol | 69.4 | 73.84 |
| CDY22414 | Canola | cytosol, extracellular | 69.4 | 73.84 |
| CDY26779 | Canola | cytosol | 68.85 | 73.68 |
| CDX69094 | Canola | cytosol | 68.85 | 73.26 |
| CDX90292 | Canola | cytosol | 68.85 | 73.26 |
| CDY12100 | Canola | cytosol | 68.85 | 73.26 |
| HORVU4Hr1G000910.3 | Barley | cytosol | 74.86 | 68.84 |
| CDY61026 | Canola | endoplasmic reticulum | 63.93 | 58.21 |
| CDX71155 | Canola | endoplasmic reticulum | 63.93 | 58.21 |
| CDY58941 | Canola | endoplasmic reticulum | 63.39 | 57.71 |
| CDY55458 | Canola | endoplasmic reticulum | 63.39 | 57.71 |
| CDX80340 | Canola | endoplasmic reticulum | 63.39 | 56.86 |
| CDY52123 | Canola | endoplasmic reticulum | 63.39 | 56.86 |
| CDX72190 | Canola | endoplasmic reticulum | 60.66 | 49.55 |
| CDY27255 | Canola | endoplasmic reticulum | 60.66 | 49.55 |
| CDX91486 | Canola | cytosol | 54.1 | 49.5 |
| CDX74892 | Canola | cytosol, plastid | 54.64 | 49.02 |
| CDX93307 | Canola | plastid | 54.1 | 48.29 |
| CDY18371 | Canola | cytosol, plastid | 54.1 | 47.83 |
| CDY58761 | Canola | plastid | 60.66 | 43.02 |
| CDX76611 | Canola | plastid | 59.02 | 42.69 |
| CDY11395 | Canola | plastid | 60.11 | 42.64 |
| CDX93994 | Canola | plastid | 60.11 | 42.15 |
| CDX69100 | Canola | endoplasmic reticulum | 50.82 | 41.52 |
| CDX75476 | Canola | endoplasmic reticulum | 50.82 | 41.52 |
| CDX76307 | Canola | endoplasmic reticulum | 50.27 | 41.26 |
| CDY17501 | Canola | endoplasmic reticulum | 49.73 | 40.44 |
| CDX78508 | Canola | plastid | 55.74 | 39.84 |
| CDX70495 | Canola | plastid | 55.74 | 39.69 |
| CDX71247 | Canola | cytosol | 56.83 | 28.81 |
| CDY36653 | Canola | cytosol | 56.28 | 28.53 |
| CDY53714 | Canola | nucleus | 59.02 | 19.42 |
| CDX93909 | Canola | nucleus | 59.56 | 17.81 |
| CDX68845 | Canola | nucleus | 48.63 | 11.63 |
| CDX75243 | Canola | nucleus | 48.09 | 11.5 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | GO:A0A078C5S3 | EnsemblPlants:CDX72175 | ProteinID:CDX72175 | ProteinID:CDX72175.1 |
| InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 | GO:GO:0003674 |
| GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00156002001 | InterPro:IPR002130 | InterPro:IPR029000 | PFAM:PF00160 |
| PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF396 |
| SUPFAM:SSF50891 | UniParc:UPI0004EB700B | SEG:seg | : | : | : |
Description
BnaC08g26990D
Coordinates
chrLK031795:+:2826625..2827971
Molecular Weight (calculated)
19655.4 Da
IEP (calculated)
7.549
GRAVY (calculated)
-0.321
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MANPKVFFDI LIGKLKAGRV VMELFADVTP RTADNFRALC TGEKGIGQAG KALHYKGSAF HRIIPGFMCQ GGDFTRGNGT GGESIHGAKF HDENFKLKHT
101: GPGILSMANS GPNTNGSQFF ICTDKTAWLD GKHVVFGKVV DGYNVVKAME NVGSERGATS EPVVIEDCGE LKNQTSEEVS NKE
101: GPGILSMANS GPNTNGSQFF ICTDKTAWLD GKHVVFGKVV DGYNVVKAME NVGSERGATS EPVVIEDCGE LKNQTSEEVS NKE
001: MANPKVFFDI LIGKMKAGRV VMELFADVTP RTANNFRALC TGENGIGKAG KALHYKGSAF HRIIPGFMCQ GGDFTRGNGT GGESIYGSKF EDENFKLKHT
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS
Arabidopsis Description
CYP19-3Peptidyl-prolyl cis-trans isomerase CYP19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q38867]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.