Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G001600.1 | Wheat | mitochondrion | 94.44 | 94.97 |
| EER96387 | Sorghum | cytosol | 81.11 | 83.43 |
| HORVU4Hr1G000910.3 | Barley | cytosol | 91.67 | 82.91 |
| Os09t0571400-01 | Rice | mitochondrion | 81.67 | 82.12 |
| KRH68802 | Soybean | cytosol | 78.33 | 80.57 |
| KRG97056 | Soybean | cytosol | 77.22 | 79.43 |
| VIT_14s0081g00700.t01 | Wine grape | cytosol | 75.56 | 78.16 |
| AT3G56070.1 | Thale cress | cytosol | 75.56 | 77.27 |
| PGSC0003DMT400073838 | Potato | cytosol | 73.33 | 75.43 |
| CDX72175 | Canola | cytosol | 76.11 | 74.86 |
| Bra007214.1-P | Field mustard | cytosol | 75.56 | 74.73 |
| CDY27248 | Canola | cytosol | 75.56 | 74.73 |
| Solyc11g006070.1.1 | Tomato | cytosol, extracellular, unclear | 62.78 | 73.86 |
| TraesCS6A01G068900.1 | Wheat | cytosol | 68.89 | 72.51 |
| TraesCS6A01G405900.1 | Wheat | cytosol | 62.78 | 67.66 |
| TraesCS7A01G410100.2 | Wheat | mitochondrion | 63.89 | 52.75 |
| TraesCS5A01G467000.1 | Wheat | golgi, unclear | 55.0 | 50.0 |
| TraesCS6A01G405800.1 | Wheat | cytosol | 64.44 | 46.96 |
| TraesCS5A01G328900.1 | Wheat | endoplasmic reticulum | 52.22 | 43.52 |
| TraesCS1A01G007500.1 | Wheat | golgi | 58.33 | 42.86 |
| TraesCS3A01G151100.1 | Wheat | plastid | 55.56 | 41.67 |
| TraesCS7A01G175300.1 | Wheat | cytosol | 60.0 | 28.5 |
| TraesCS6A01G313700.1 | Wheat | cytosol | 59.44 | 26.35 |
| TraesCS2A01G237700.1 | Wheat | nucleus | 56.67 | 15.86 |
| TraesCS6A01G176900.1 | Wheat | nucleus | 50.56 | 11.06 |
Protein Annotations
| MapMan:18.12.1 | Gene3D:2.40.100.10 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 |
| GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005794 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0046686 | InterPro:IPR002130 | InterPro:IPR029000 | PFAM:PF00160 |
| PIRSF:PIRSF001467 | PRINTS:PR00153 | PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF396 | SUPFAM:SSF50891 |
| EnsemblPlantsGene:TraesCS4A01G312600 | EnsemblPlants:TraesCS4A01G312600.1 | TIGR:cd01926 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:+:603637548..603638907
Molecular Weight (calculated)
18841.6 Da
IEP (calculated)
8.629
GRAVY (calculated)
-0.172
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAKNPKVFF DILIGQAKAG RVIMELYADK VPKTAANFRQ LCTGEKGLGK SGKPLHYKGS AFHRIIPGSM CQGGDFTRGN GTGGESVYGQ KFADENFLLR
101: HTGPGVLSMA NAGPGTNGSQ FFICTAKTPW LDGKHVVFGQ VVDGYRVVEK MEAVGSSGGA TAEPVVIEDC GQLPDGSVGG
101: HTGPGVLSMA NAGPGTNGSQ FFICTAKTPW LDGKHVVFGQ VVDGYRVVEK MEAVGSSGGA TAEPVVIEDC GQLPDGSVGG
001: MANPKVFFDI LIGKMKAGRV VMELFADVTP RTANNFRALC TGENGIGKAG KALHYKGSAF HRIIPGFMCQ GGDFTRGNGT GGESIYGSKF EDENFKLKHT
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS
Arabidopsis Description
CYP19-3Peptidyl-prolyl cis-trans isomerase CYP19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q38867]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.