CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56070.1	EES01631	AT5G21274.1	17360592
AT3G56070.1	EES09201	AT5G21274.1	17360592
AT3G56070.1	EES16322	AT5G21274.1	17360592
AT3G56070.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0571400-01	Rice	mitochondrion	86.86	84.92
KRG97056	Soybean	cytosol	82.29	82.29
KRH68802	Soybean	cytosol	81.71	81.71
TraesCS4D01G001600.1	Wheat	mitochondrion	83.43	81.56
TraesCS4A01G312600.1	Wheat	cytosol, mitochondrion, plastid	83.43	81.11
VIT_14s0081g00700.t01	Wine grape	cytosol	80.57	81.03
AT3G56070.1	Thale cress	cytosol	79.43	78.98
Solyc11g006070.1.1	Tomato	cytosol, extracellular, unclear	68.0	77.78
PGSC0003DMT400073838	Potato	cytosol	77.71	77.71
CDX72175	Canola	cytosol	80.57	77.05
Bra007214.1-P	Field mustard	cytosol	80.0	76.92
CDY27248	Canola	cytosol	80.0	76.92
EES05164	Sorghum	cytosol	73.71	75.0
EES04388	Sorghum	cytosol	72.0	73.68
HORVU4Hr1G000910.3	Barley	cytosol	83.43	73.37
EER91725	Sorghum	cytosol	64.57	59.47
OQU77069	Sorghum	mitochondrion	70.29	55.91
OQU77068	Sorghum	endoplasmic reticulum	64.0	52.58
EER90660	Sorghum	plastid	56.57	49.25
EER88931	Sorghum	endoplasmic reticulum	58.86	46.61
EER88932	Sorghum	endoplasmic reticulum	57.71	45.7
EER97099	Sorghum	endoplasmic reticulum	54.86	44.44
EES17522	Sorghum	plastid	60.57	42.57
EES00602	Sorghum	plastid	58.86	42.56
EER88080	Sorghum	cytosol	61.71	27.76
EES05845	Sorghum	cytosol	58.29	25.76
EER95944	Sorghum	nucleus	62.86	16.98
OQU84603	Sorghum	nucleus	48.0	10.1

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:8062274	UniProt:C5X6M4	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlants:EER96387	ProteinID:EER96387	ProteinID:EER96387.1	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005794	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	GO:GO:0046686	InterPro:IPR002130
InterPro:IPR029000	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF396	EnsemblPlantsGene:SORBI_3002G138800	SUPFAM:SSF50891	UniParc:UPI0001A83674	RefSeq:XP_002459866.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:21621560..21623075

Molecular Weight (calculated)

18493.0 Da

IEP (calculated)

8.340

GRAVY (calculated)

-0.147

Length

175 amino acids

Sequence
(BLAST)

001: MAKNPKVFFD ILIGKSQAGR VVMELFADKV PKTAENFRAL CTGEKGLGSS GKPLHYKGSA FHRIIPSFMC QGGDFTRGNG TGGESIYGAK FADENFKLHH
101: TGPGVLSMAN AGPNTNGSQF FICTAQTSWL DGKHVVFGKV VDGYAVVQKM EAVGSGSGAT SQTVVIEDCG QLAHD

Best Arabidopsis Sequence Match ( AT3G56070.2 )
(BLAST)

001: MANPKVFFDI LIGKMKAGRV VMELFADVTP RTANNFRALC TGENGIGKAG KALHYKGSAF HRIIPGFMCQ GGDFTRGNGT GGESIYGSKF EDENFKLKHT
101: GPGILSMANS GPNTNGSQFF ICTEKTSWLD GKHVVFGKVV DGYNVVKAME DVGSDMGNPS ERVVIEDCGE LKNPSS

Arabidopsis Description

CYP19-3Peptidyl-prolyl cis-trans isomerase CYP19-3 [Source:UniProtKB/Swiss-Prot;Acc:Q38867]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.