CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030339_P001	Maize	mitochondrion	83.68	86.89
Os10t0154700-01	Rice	cytosol	72.63	76.24
EES05164	Sorghum	cytosol	59.47	65.7
EES04388	Sorghum	cytosol	58.95	65.5
EER96387	Sorghum	cytosol	59.47	64.57
EER97099	Sorghum	endoplasmic reticulum	50.53	44.44
OQU77069	Sorghum	mitochondrion	49.47	42.73
EER90660	Sorghum	plastid	44.74	42.29
OQU77068	Sorghum	endoplasmic reticulum	46.84	41.78
EES17522	Sorghum	plastid	51.58	39.36
EER88931	Sorghum	endoplasmic reticulum	45.26	38.91
EER88932	Sorghum	endoplasmic reticulum	44.74	38.46
EES00602	Sorghum	plastid	47.37	37.19
EER88080	Sorghum	cytosol	54.21	26.48
EES05845	Sorghum	cytosol	54.74	26.26
EER95944	Sorghum	nucleus	51.05	14.97
OQU84603	Sorghum	nucleus	44.21	10.1

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:8062787	UniProt:C5WNZ3	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlants:EER91725	ProteinID:EER91725	ProteinID:EER91725.1	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF301	EnsemblPlantsGene:SORBI_3001G264700	SUPFAM:SSF50891	UniParc:UPI0001A821B6	RefSeq:XP_002464727.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:49578192..49579338

Molecular Weight (calculated)

20228.2 Da

IEP (calculated)

9.291

GRAVY (calculated)

-0.211

Length

190 amino acids

Sequence
(BLAST)

001: MARPKNNQNP RVFLDLSIGG ELVGRVVIEL FADKVPRTAE NFRQLCTGER GLGRWSGKRL HYKGAPFHRV VPGFMCQGGD ITAGNGTGGE SALGDGGRYF
101: ADEALGAVRH SGPGVVSMAN AGPNTNGSQF FITFADAPWL DGRHVAFGRV EQGMAALRAI EKAGSMSGRT VRPVVIADCG QLKDDYAAMF

Best Arabidopsis Sequence Match ( AT2G16600.1 )
(BLAST)

001: MATNPKVYFD MTVGGKSAGR IVMELYADTT PETAENFRAL CTGERGIGKQ GKPLHYKGSS FHRVIPKFMC QGGDFTAGNG TGGESIYGSK FKDENFIKKH
101: TGPGILSMAN AGANTNGSQF FICTEKTSWL DGKHVVFGQV VEGLNVVRDI EKVGSDSGRT SKPVVIADCG QIS

Arabidopsis Description

CYP19-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178VVJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.