CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
mitochondrion 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89430
EER89431
KXG19616
OQU75612
OQU75930
OQU76071
OQU85385

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13120.1	EER89430	AT4G25200.1	21798944
AT5G13120.1	EER89431	AT4G25200.1	21798944
AT5G13120.1	KXG19616	AT4G25200.1	21798944
AT5G13120.1	OQU75612	AT4G25200.1	21798944
AT5G13120.1	OQU75930	AT4G25200.1	21798944
AT5G13120.1	OQU76071	AT4G25200.1	21798944
AT5G13120.1	OQU85385	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035761_P001	Maize	plastid	96.79	96.02
Zm00001d011104_P001	Maize	plastid	94.78	95.16
Os05t0103200-01	Rice	plastid	86.35	86.0
TraesCS1B01G011100.1	Wheat	plastid	81.93	83.27
TraesCS1A01G007500.1	Wheat	golgi	81.93	83.27
TraesCS1D01G000800.2	Wheat	plastid	81.12	82.45
GSMUA_Achr2P21150_001	Banana	plastid	73.9	73.9
HORVU1Hr1G000710.1	Barley	mitochondrion, plastid	81.93	72.6
Solyc01g009990.2.1	Tomato	plastid	70.28	70.56
PGSC0003DMT400013412	Potato	extracellular, plastid	69.08	69.35
VIT_01s0146g00110.t01	Wine grape	plastid	72.29	68.7
KRH36359	Soybean	nucleus, plastid	67.07	66.53
KRG93128	Soybean	nucleus, plastid	66.67	65.61
EES04388	Sorghum	cytosol	44.58	64.91
EES05164	Sorghum	cytosol	44.18	63.95
Bra006182.1-P	Field mustard	plastid	65.46	63.42
CDX78508	Canola	plastid	65.06	63.28
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	68.27	62.73
AT5G13120.1	Thale cress	plastid	65.06	62.55
CDX70495	Canola	plastid	64.26	62.26
EER96387	Sorghum	cytosol	42.57	60.57
EES00602	Sorghum	plastid	52.21	53.72
OQU77069	Sorghum	mitochondrion	45.78	51.82
EER91725	Sorghum	cytosol	39.36	51.58
OQU77068	Sorghum	endoplasmic reticulum	42.97	50.23
EER97099	Sorghum	endoplasmic reticulum	41.77	48.15
EER90660	Sorghum	plastid	38.55	47.76
EER88931	Sorghum	endoplasmic reticulum	42.17	47.51
EER88932	Sorghum	endoplasmic reticulum	41.77	47.06
EES05845	Sorghum	cytosol	40.16	25.25
EER88080	Sorghum	cytosol	39.36	25.19
EER95944	Sorghum	nucleus	35.74	13.73
OQU84603	Sorghum	nucleus	30.12	9.01

Protein Annotations

MapMan:1.1.8.1.4.5	MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:8065277	UniProt:C5YXY3	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlants:EES17522	ProteinID:EES17522	ProteinID:EES17522.1
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009533	GO:GO:0009534	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0010275	GO:GO:0016020	GO:GO:0016043
GO:GO:0016853	GO:GO:0019538	GO:GO:0031977	GO:GO:0043424	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383
EnsemblPlantsGene:SORBI_3009G001500	SUPFAM:SSF50891	unigene:Sbi.17909	UniParc:UPI0001A88C1B	RefSeq:XP_002439092.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:163154..166171

Molecular Weight (calculated)

26194.2 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.131

Length

249 amino acids

Sequence
(BLAST)

001: MAAAAATSFA TLAVARSAGQ RSLLASKAAP SPLLSLRSAG LPSQAVSFSG GLAASTSHSR ARFATSASAE PKEADLQSKI TNKVYFDISI GNPVGKNVGR
101: IVIGLYGDDV PQTAENFRAL CTGEKGFGYK GSSFHRVISD FMIQGGDFDK GNGTGGKSIY GRTFKDENFK LVHTGPGVVS MANAGPNTNG SQFFICTVKT
201: PWLDGRHVVF GQVLEGMDIV KLIESQETDR GDRPKKKVVI SECGELPVV

Best Arabidopsis Sequence Match ( AT5G13120.2 )
(BLAST)

001: MATLSMTLSL SAPPRRLSPI NTSAFTSTSF RLRTKSSFDS ISFSSSTPFS ASSLLLHTSY TKRNHRCFSV QSNAEVVTEP QSKITHKVYF DISVGNPVGK
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA

Arabidopsis Description

PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.