Factsheet for VIT_01s0146g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
extracellular 1
golgi 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0057g00690.t01
VIT_16s0022g00510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13120.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944
AT5G13120.1	VIT_12s0057g00690.t01	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009990.2.1	Tomato	plastid	70.61	74.6
PGSC0003DMT400013412	Potato	extracellular, plastid	70.23	74.19
EES17522	Sorghum	plastid	68.7	72.29
Os05t0103200-01	Rice	plastid	67.94	71.2
Zm00001d035761_P001	Maize	plastid	67.94	70.92
GSMUA_Achr2P21150_001	Banana	plastid	67.18	70.68
Zm00001d011104_P001	Maize	plastid	66.79	70.56
KRH36359	Soybean	nucleus, plastid	66.03	68.92
TraesCS1A01G007500.1	Wheat	golgi	64.12	68.57
TraesCS1B01G011100.1	Wheat	plastid	63.74	68.16
TraesCS1D01G000800.2	Wheat	plastid	63.36	67.76
KRG93128	Soybean	nucleus, plastid	65.27	67.59
CDX78508	Canola	plastid	66.03	67.58
Bra006182.1-P	Field mustard	plastid	66.03	67.32
CDX70495	Canola	plastid	65.27	66.54
AT5G13120.1	Thale cress	plastid	64.12	64.86
VIT_18s0001g14400.t01	Wine grape	extracellular	41.6	63.37
VIT_03s0038g01930.t01	Wine grape	cytosol	41.22	62.79
VIT_14s0081g00700.t01	Wine grape	cytosol	40.84	61.49
HORVU1Hr1G000710.1	Barley	mitochondrion, plastid	63.74	59.43
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	61.45	59.41
VIT_06s0004g06610.t01	Wine grape	endoplasmic reticulum	43.13	56.5
VIT_07s0005g02410.t01	Wine grape	plastid	53.82	55.73
VIT_13s0084g00620.t01	Wine grape	cytosol	37.02	51.32
VIT_13s0067g00870.t01	Wine grape	endoplasmic reticulum	43.89	50.44
VIT_03s0038g02200.t01	Wine grape	endoplasmic reticulum	41.22	48.43
VIT_03s0063g01030.t01	Wine grape	cytosol	37.79	27.42
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	39.69	14.31
VIT_04s0008g05090.t01	Wine grape	nucleus	32.06	10.55

Protein Annotations

MapMan:1.1.8.1.4.5	EntrezGene:100248997	wikigene:100248997	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:AM431721
ProteinID:CAN82436	ProteinID:CAN82436.1	ProteinID:CBI38153	ProteinID:CBI38153.3	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	UniProt:D7U5Y4	EMBL:FN596513	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	EntrezGene:LOC100248997
wikigene:LOC100248997	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071
PANTHER:PTHR11071:SF383	SUPFAM:SSF50891	TIGR:TC57746	UniParc:UPI0001BE4EDA	ArrayExpress:VIT_01s0146g00110	EnsemblPlantsGene:VIT_01s0146g00110
EnsemblPlants:VIT_01s0146g00110.t01	RefSeq:XP_002265030	RefSeq:XP_002265030.2	SEG:seg	:	:

Description

Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:D7U5Y4]

Coordinates

chr1:-:21897421..21913235

Molecular Weight (calculated)

28024.6 Da

IEP (calculated)

10.220

GRAVY (calculated)

-0.154

Length

262 amino acids

Sequence
(BLAST)

001: MAASLTTLSN VGSLSSPRSV AQIKALGPTC NALKLPRSPF PSNVSSSSSS SFVSGSFRLV PLTSSLNPCS RRRTGLLSSL RASAQEAPLQ SKVTQKVYFD
101: ISIGNPVGKV VGRIVIGLFG DDVPQTAENF RALCTGEKGF GYKGSTFHRV IKDFMIQGGD FDKGNGTGGK SIYGRTFKDE NFKLAHVGPG VVSMANAGPN
201: TNGSQFFICT VKTPWLDQRH VVFGQVLEGM DIVKLVESQE TDRGDRPRKK VVISECGELP MV

Best Arabidopsis Sequence Match ( AT5G13120.1 )
(BLAST)

001: MATLSMTLSN PKSLSAPPRR LSPINTSAFT STSFRLRTKS SFDSISFSSS TPFSASSLLL HTSYTKRNHR CFSVQSNAEV VTEPQSKITH KVYFDISVGN
101: PVGKLAGRIV IGLYGDDVPQ TVENFRALCT GEKGFGYKGS TFHRVIRDFM IQGGDFEKGN GTGGKSVYGR TFKDENFKLS HVGPGVLSMA NAGPNTNGSQ
201: FFICTIKTSW LDGRHVVFGQ VIEGMEVVKL IEEQETDRGD RPRKKVVIAD CGQLPMSEA

Arabidopsis Description

PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.