Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 8
- vacuole 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g076970.2.1 | Tomato | nucleus | 89.5 | 86.47 |
| PGSC0003DMT400078234 | Potato | endoplasmic reticulum | 89.0 | 85.99 |
| GSMUA_Achr7P17320_001 | Banana | endoplasmic reticulum | 84.5 | 80.86 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 80.0 | 80.4 |
| TraesCS7A01G410100.2 | Wheat | mitochondrion | 84.0 | 77.06 |
| TraesCS7B01G309500.2 | Wheat | mitochondrion | 84.0 | 77.06 |
| HORVU7Hr1G095720.2 | Barley | mitochondrion | 84.0 | 77.06 |
| TraesCS7D01G403300.2 | Wheat | mitochondrion | 83.5 | 76.61 |
| Os06t0708500-01 | Rice | plasma membrane, plastid | 86.0 | 76.44 |
| OQU77069 | Sorghum | mitochondrion | 82.5 | 75.0 |
| HORVU6Hr1G050970.4 | Barley | cytosol, endoplasmic reticulum | 81.0 | 75.0 |
| Zm00001d014732_P002 | Maize | mitochondrion | 82.5 | 75.0 |
| VIT_13s0067g00870.t01 | Wine grape | endoplasmic reticulum | 78.5 | 68.86 |
| VIT_03s0038g01930.t01 | Wine grape | cytosol | 58.5 | 68.02 |
| VIT_18s0001g14400.t01 | Wine grape | extracellular | 58.0 | 67.44 |
| VIT_14s0081g00700.t01 | Wine grape | cytosol | 58.5 | 67.24 |
| Zm00001d036442_P001 | Maize | mitochondrion | 83.5 | 60.29 |
| VIT_03s0038g02200.t01 | Wine grape | endoplasmic reticulum | 57.5 | 51.57 |
| VIT_13s0084g00620.t01 | Wine grape | cytosol | 47.5 | 50.26 |
| VIT_07s0005g02410.t01 | Wine grape | plastid | 56.0 | 44.27 |
| VIT_01s0146g00110.t01 | Wine grape | plastid | 56.5 | 43.13 |
| VIT_03s0063g01030.t01 | Wine grape | cytosol | 51.0 | 28.25 |
| VIT_00s0179g00290.t01 | Wine grape | endoplasmic reticulum, golgi | 53.5 | 14.72 |
| VIT_04s0008g05090.t01 | Wine grape | nucleus | 48.0 | 12.06 |
Protein Annotations
| EntrezGene:100251977 | wikigene:100251977 | MapMan:18.12.1 | Gene3D:2.40.100.10 | EMBL:AM479738 | ProteinID:CAN70835 |
| ProteinID:CAN70835.1 | ProteinID:CBI15954 | ProteinID:CBI15954.3 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS |
| InterPro:Cyclophilin-type_PPIase_dom | UniProt:D7SJX8 | EMBL:FN594951 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 |
| GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR002130 | InterPro:IPR029000 | EntrezGene:LOC100251977 | wikigene:LOC100251977 |
| PFAM:PF00160 | PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 | PANTHER:PTHR11071 |
| PANTHER:PTHR11071:SF384 | SUPFAM:SSF50891 | SignalP:SignalP-noTM | TIGR:TC51820 | UniParc:UPI0001BE11DF | ArrayExpress:VIT_06s0004g06610 |
| EnsemblPlantsGene:VIT_06s0004g06610 | EnsemblPlants:VIT_06s0004g06610.t01 | unigene:Vvi.7692 | RefSeq:XP_002277763 | RefSeq:XP_002277763.1 | SEG:seg |
Description
Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:D7SJX8]
Coordinates
chr6:-:7337673..7343010
Molecular Weight (calculated)
21525.1 Da
IEP (calculated)
9.688
GRAVY (calculated)
-0.102
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLVLWSLLL LGTLAISQAK KSTENLKEVT HKVYFDVEID GKPAGRVVMG LFGKTVPKTV ENFRALCTGE KGIGSSGKPL HFKGSAFHRI IPSFMIQGGD
101: FTLGDGRGGE SIYGEKFADE NFKLKHTGPG LLSMANAGPD TNGSQFFITT VTTSWLDGRH VVFGKVLSGM DVVYKMEAEG RQSGTPKTKV VIADSGELPL
101: FTLGDGRGGE SIYGEKFADE NFKLKHTGPG LLSMANAGPD TNGSQFFITT VTTSWLDGRH VVFGKVLSGM DVVYKMEAEG RQSGTPKTKV VIADSGELPL
001: MASSVTLLLW SLLLLGTLSA IQAKKSKENL KEITHKVYFD VEIDGKAAGR IVMGLFGKTV PKTVENFRAL CTGEKGIGKN GKALHYKGSS FHRIIPSFML
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL
Arabidopsis Description
CYP20-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UBF4]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.