Factsheet for VIT_03s0063g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108340.2.1	Tomato	cytosol	85.87	85.64
PGSC0003DMT400066358	Potato	cytosol	84.76	84.53
KRH71172	Soybean	cytosol	84.21	84.21
KRH50243	Soybean	cytosol	83.93	83.93
GSMUA_Achr8P23380_001	Banana	cytosol	81.44	76.17
GSMUA_Achr5P05580_001	Banana	cytosol	80.06	73.72
TraesCS7D01G176900.1	Wheat	cytosol	75.62	72.8
Zm00001d037189_P004	Maize	extracellular	77.56	71.98
EER88080	Sorghum	cytosol	77.56	71.98
TraesCS7A01G175300.1	Wheat	cytosol	75.35	71.77
Os06t0216800-01	Rice	cytosol	78.67	71.72
TraesCS7B01G080700.1	Wheat	cytosol	75.35	71.58
HORVU7Hr1G036160.1	Barley	cytosol	75.35	71.58
Os02t0761100-01	Rice	cytosol	76.18	68.24
EES05845	Sorghum	cytosol	74.24	67.68
TraesCS6A01G313700.1	Wheat	cytosol	74.79	66.5
TraesCS6D01G293100.1	Wheat	cytosol	74.79	66.18
TraesCS6B01G343800.1	Wheat	cytosol	74.52	65.93
VIT_03s0038g01930.t01	Wine grape	cytosol	29.36	61.63
VIT_18s0001g14400.t01	Wine grape	extracellular	29.09	61.05
VIT_14s0081g00700.t01	Wine grape	cytosol	29.36	60.92
HORVU6Hr1G077290.1	Barley	plastid	74.24	58.9
VIT_06s0004g06610.t01	Wine grape	endoplasmic reticulum	28.25	51.0
VIT_13s0084g00620.t01	Wine grape	cytosol	26.32	50.26
VIT_03s0038g02200.t01	Wine grape	endoplasmic reticulum	28.25	45.74
VIT_13s0067g00870.t01	Wine grape	endoplasmic reticulum	26.87	42.54
VIT_07s0005g02410.t01	Wine grape	plastid	26.87	38.34
VIT_01s0146g00110.t01	Wine grape	plastid	27.42	37.79
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	38.78	19.26
VIT_04s0008g05090.t01	Wine grape	nucleus	33.52	15.2

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100262316	wikigene:100262316	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:CBI32461
ProteinID:CBI32461.3	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	UniProt:D7TPN8
EMBL:FN596006	GO:GO:0000003	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006457	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010050	GO:GO:0010582	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR029000
EntrezGene:LOC100262316	wikigene:LOC100262316	PFAM:PF00160	PFAM:PF00515	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50005	PFscan:PS50072	PFscan:PS50293	PANTHER:PTHR11071	PANTHER:PTHR11071:SF310	SMART:SM00028
SUPFAM:SSF48452	SUPFAM:SSF50891	TIGR:TC61572	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1
InterPro:TPR_repeat	UniParc:UPI00015C8ACE	ArrayExpress:VIT_03s0063g01030	EnsemblPlantsGene:VIT_03s0063g01030	EnsemblPlants:VIT_03s0063g01030.t01	unigene:Vvi.12642
RefSeq:XP_002284980	RefSeq:XP_002284980.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:4455483..4467024

Molecular Weight (calculated)

40297.7 Da

IEP (calculated)

6.412

GRAVY (calculated)

-0.549

Length

361 amino acids

Sequence
(BLAST)

001: MGRPRCYLDI SIGEELEGRV VVELYNDIVP RTAENFRALC TGEKGIGPNT GVPLHYKGVC FHRVIRGFMI QGGDISAGNG TGGESIYGLK FEDENFELKH
101: ERKGMLSMAN SGANTNGSQF FITTTRTSHL DGKHVVFGKV VKGMGVVRSI EHVTTGDNDC PTVNVLIADC GEIPEGVDNG VSNFFKDGDT YPDWPADLDE
201: NPNDLSWWTN AVDSVKAFGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEEKSSCLR KTKSLIFTNS SACKLKLGDL KGALLDTDFA MRDEENNVKA
301: LYRQGQAYMA LNDIDAAAES FKKALELEPN DGGIKRELAA AKKKIADRRE QERKAYSRMF Q

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.