Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P05580_001 | Banana | cytosol | 90.16 | 88.78 |
| VIT_03s0063g01030.t01 | Wine grape | cytosol | 76.17 | 81.44 |
| TraesCS7D01G176900.1 | Wheat | cytosol | 78.24 | 80.53 |
| TraesCS7A01G175300.1 | Wheat | cytosol | 79.02 | 80.47 |
| Solyc01g108340.2.1 | Tomato | cytosol | 75.39 | 80.39 |
| TraesCS7B01G080700.1 | Wheat | cytosol | 79.02 | 80.26 |
| Zm00001d037189_P004 | Maize | extracellular | 80.83 | 80.21 |
| EER88080 | Sorghum | cytosol | 80.57 | 79.95 |
| PGSC0003DMT400066358 | Potato | cytosol | 74.87 | 79.83 |
| HORVU7Hr1G036160.1 | Barley | cytosol | 78.5 | 79.74 |
| Os06t0216800-01 | Rice | cytosol | 81.35 | 79.29 |
| KRH71172 | Soybean | cytosol | 73.83 | 78.95 |
| KRH50243 | Soybean | cytosol | 73.83 | 78.95 |
| KRH57738 | Soybean | cytosol, nucleus | 73.32 | 78.61 |
| KRH04660 | Soybean | cytosol, nucleus | 72.28 | 77.5 |
| Os02t0761100-01 | Rice | cytosol | 78.5 | 75.19 |
| EES05845 | Sorghum | cytosol | 75.65 | 73.74 |
| AT2G15790.1 | Thale cress | cytosol | 68.39 | 73.13 |
| TraesCS6D01G293100.1 | Wheat | cytosol | 76.68 | 72.55 |
| TraesCS6B01G343800.1 | Wheat | cytosol | 76.42 | 72.3 |
| TraesCS6A01G313700.1 | Wheat | cytosol | 75.91 | 72.17 |
| Bra015237.1-P | Field mustard | cytosol | 66.84 | 71.47 |
| CDX71247 | Canola | cytosol | 66.84 | 71.47 |
| CDY36653 | Canola | cytosol | 66.84 | 71.47 |
| PGSC0003DMT400026079 | Potato | cytosol | 64.77 | 69.25 |
| Solyc02g090480.2.1 | Tomato | cytosol | 63.47 | 67.87 |
| GSMUA_Achr3P12630_001 | Banana | plasma membrane, unclear | 25.13 | 64.24 |
| HORVU6Hr1G077290.1 | Barley | plastid | 75.65 | 64.18 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 28.5 | 55.28 |
| GSMUA_Achr7P17320_001 | Banana | endoplasmic reticulum | 28.76 | 53.11 |
| GSMUA_Achr7P04880_001 | Banana | cytosol | 24.87 | 49.48 |
| GSMUA_Achr2P00020_001 | Banana | plastid | 24.87 | 45.93 |
| GSMUA_Achr1P07610_001 | Banana | endoplasmic reticulum | 24.35 | 43.52 |
| GSMUA_Achr2P21150_001 | Banana | plastid | 27.72 | 42.97 |
| GSMUA_Achr6P16580_001 | Banana | endoplasmic reticulum, mitochondrion | 26.94 | 38.38 |
| GSMUA_Achr9P28600_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 33.94 | 19.29 |
| GSMUA_Achr5P03050_001 | Banana | nucleus | 34.2 | 19.02 |
| GSMUA_Achr10P... | Banana | nucleus | 34.46 | 15.99 |
| GSMUA_Achr2P15900_001 | Banana | nucleus | 33.68 | 15.64 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:18.12.1 | Gene3D:2.40.100.10 | ncoils:Coil | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase |
| InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr8G23380_001 | EnsemblPlants:GSMUA_Achr8P23380_001 | EnsemblPlants:GSMUA_Achr8T23380_001 |
| InterPro:IPR002130 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:IPR029000 | UniProt:M0TSZ1 |
| PFAM:PF00160 | PFAM:PF00515 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50005 | PFscan:PS50072 |
| PFscan:PS50293 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF310 | SMART:SM00028 | SUPFAM:SSF48452 | SUPFAM:SSF50891 |
| InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | UniParc:UPI00029498AB | SEG:seg |
Description
Peptidyl-prolyl cis-trans isomerase CYP40 [Source:GMGC_GENE;Acc:GSMUA_Achr8G23380_001]
Coordinates
chr8:-:27859437..27866716
Molecular Weight (calculated)
42626.4 Da
IEP (calculated)
6.330
GRAVY (calculated)
-0.546
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGDGGDEAA EGKRNPRCYM DVSIGGEMEG RIVVELFADV VPRTAENFRA LCTREKGVGP HTGVPLHFKG SCFHRVIKGF MIQGGDISAG DGTGGESIYG
101: LKFEDENFIL KHERKGMLSM ANSGPNTNGS QFFITTTRTS HLDGKHVVFG KVLKGMGVVR SIEHTPVGDA DCTTVDVVIS DCGELPEGAD DGVSNFFKDG
201: DLYPDWPNDL DDKPTEVSWW MNAVASAKTF GNDFFKKQDY KMALRKYRKA LRYLDICWEK EEIDEGNSLL RKTKSIILTN SSACKLKLGD LKGALLDADF
301: ALREREGNAK AYFRQGQAHM ALNDVDAAVE SFKKALELEP NDGGIKKELA AAKKKATDRR DQERKAYSRM FQTSVKSVAT NEDKNC
101: LKFEDENFIL KHERKGMLSM ANSGPNTNGS QFFITTTRTS HLDGKHVVFG KVLKGMGVVR SIEHTPVGDA DCTTVDVVIS DCGELPEGAD DGVSNFFKDG
201: DLYPDWPNDL DDKPTEVSWW MNAVASAKTF GNDFFKKQDY KMALRKYRKA LRYLDICWEK EEIDEGNSLL RKTKSIILTN SSACKLKLGD LKGALLDADF
301: ALREREGNAK AYFRQGQAHM ALNDVDAAVE SFKKALELEP NDGGIKKELA AAKKKATDRR DQERKAYSRM FQTSVKSVAT NEDKNC
001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V
Arabidopsis Description
CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.