Factsheet for GSMUA_Achr2P15900_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	61.61	75.41
GSMUA_Achr10P...	Banana	nucleus	66.31	66.23
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	11.19	61.59
GSMUA_Achr10P...	Banana	endoplasmic reticulum	11.67	48.74
GSMUA_Achr7P17320_001	Banana	endoplasmic reticulum	12.15	48.33
VIT_04s0008g05090.t01	Wine grape	nucleus	45.37	47.36
GSMUA_Achr7P04880_001	Banana	cytosol	10.71	45.88
GSMUA_Achr2P00020_001	Banana	plastid	11.31	44.98
HORVU6Hr1G037500.21	Barley	nucleus	42.48	42.89
TraesCS6A01G176900.1	Wheat	nucleus	42.0	42.41
KRH52477	Soybean	nucleus	43.08	42.12
KRH61803	Soybean	nucleus	42.48	41.87
OQU84603	Sorghum	nucleus	41.76	41.71
CDX68845	Canola	nucleus	38.39	41.7
TraesCS6B01G208900.2	Wheat	cytosol	42.36	41.46
TraesCS6D01G167200.3	Wheat	cytosol	42.36	41.46
Solyc08g067090.2.1	Tomato	nucleus	39.83	40.91
CDX75243	Canola	nucleus	37.55	40.78
Zm00001d053620_P016	Maize	nucleus	40.07	40.66
GSMUA_Achr5P03050_001	Banana	nucleus	33.81	40.49
Bra011346.1-P	Field mustard	nucleus	37.42	40.28
GSMUA_Achr1P07610_001	Banana	endoplasmic reticulum	10.47	40.28
Zm00001d015729_P005	Maize	nucleus	39.95	38.65
AT4G32420.6	Thale cress	nucleus	38.63	38.35
GSMUA_Achr2P21150_001	Banana	plastid	11.43	38.15
PGSC0003DMT400059575	Potato	nucleus	31.89	37.97
KRH15996	Soybean	nucleus	37.55	36.75
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	11.79	36.16
GSMUA_Achr8P23380_001	Banana	cytosol	15.64	33.68
GSMUA_Achr5P05580_001	Banana	cytosol	15.64	33.16

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr2G15900_001
EnsemblPlants:GSMUA_Achr2P15900_001	EnsemblPlants:GSMUA_Achr2T15900_001	InterPro:IPR002130	InterPro:IPR029000	UniProt:M0S8D1	PFAM:PF00160
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF255	SUPFAM:SSF50891
UniParc:UPI0002969887	SEG:seg	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G15900_001]

Coordinates

chr2:+:17020707..17031928

Molecular Weight (calculated)

93458.1 Da

IEP (calculated)

11.706

GRAVY (calculated)

-1.311

Length

831 amino acids

Sequence
(BLAST)

001: MQAPSQGRYG KYWSPTVLNL TYRRWSREAF RFTHCLPIAS QSCCYRGCSS QIPLLAIPQD QVSLFALLKT KMKKKVKKNP IVFLDVSVDG NAARRMVFEL
101: FADIVPKTAE NFRALCTGEI GFGLMTRKPL HYKGSIFHRI IKGFMAQGGD FSRHNGTGGE SIYGGKFADE NFMLNHDGPG LLAMANAGRD TNGSQFFITF
201: KAAPHLDGKH VVFGKLILGQ ETLRDMENVD VDGDRPVVPV KIVSCGELNE SAAALHENEK KKNAKLKRVR DASDDDHEGR SRGQHKKSSK RRKKKKRRHY
301: SSQSDSSSET ETESSEIDSD SESDTSSASD SSGSSDDRRQ KRKKYSKRDK YKRGKRKRDR KREKRHRRHD KKSRHKAKRT PDSESETESK NDSSSDAAGN
401: DRRRERKSKV TSHKSDDKQS PVPLGRENTI ECPDNGDKPD KPLGEEPKSQ GENGELQSSD IREPTDRDMD RLLGSDDIPN KSRSQITRRN HSMSKSMSIS
501: PRSPTQSPSL SARRSLSRSP TTRDLSRGPV HPPRRSSTSR SPPQRSISRS PSGRNARSPI RKVVSKGPVS QTRRSKSRSP VKVDSRSVSR SSAGSVSRSP
601: VKSNGRSKSR SPVRAHSRRS ISRSPVRRAI SPSSNRRRSL SRSIPPDGSP KRIRRGRGFS QQYSFARRYR TPSPDRSPNR FHRYGGRSDR DRYSSYRSYH
701: NRSPRRYRSP QRGRTPPRYR NRRSRSVSRS PAARPRVGYS MNSAHSRSPA SEKPRPHGTR DNVRSEKHQS VSRSRSPSGS RSRSRSRSRS SADTPSPKRV
801: SKEKSRSPSS SSGGRKGLVS YGDASPDSDG K

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.