Factsheet for GSMUA_Achr7P04880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
endoplasmic reticulum 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P03140_001
GSMUA_Achr6P22810_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29960.1	GSMUA_Achr6P03140_001	AT1G13980.1	10715321
AT2G29960.1	GSMUA_Achr6P22810_001	AT1G13980.1	10715321

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002623.1-P	Field mustard	cytosol	67.01	66.33
GSMUA_Achr10P...	Banana	endoplasmic reticulum	67.53	65.83
CDX80340	Canola	endoplasmic reticulum	69.07	65.69
CDY52123	Canola	endoplasmic reticulum	69.07	65.69
GSMUA_Achr7P17320_001	Banana	endoplasmic reticulum	70.62	65.55
KRG98290	Soybean	endoplasmic reticulum	68.56	65.2
KRH30309	Soybean	endoplasmic reticulum	68.56	65.2
Bra018353.1-P	Field mustard	endoplasmic reticulum	67.53	65.17
CDX71155	Canola	endoplasmic reticulum	67.53	65.17
CDY55458	Canola	endoplasmic reticulum	67.53	65.17
CDY58941	Canola	endoplasmic reticulum	67.53	65.17
CDY61026	Canola	endoplasmic reticulum	67.53	65.17
Bra006748.1-P	Field mustard	endoplasmic reticulum	67.01	64.68
AT2G29960.1	Thale cress	endoplasmic reticulum	67.01	64.68
Os06t0708400-01	Rice	plasma membrane	69.07	64.42
AT5G58710.1	Thale cress	endoplasmic reticulum	67.53	64.22
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	47.42	60.93
OQU77068	Sorghum	endoplasmic reticulum	64.95	59.15
EER88931	Sorghum	endoplasmic reticulum	65.46	57.47
EER88932	Sorghum	endoplasmic reticulum	63.4	55.66
GSMUA_Achr2P00020_001	Banana	plastid	48.97	45.45
GSMUA_Achr2P21150_001	Banana	plastid	57.22	44.58
GSMUA_Achr1P07610_001	Banana	endoplasmic reticulum	49.48	44.44
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	55.67	39.85
Zm00001d014731_P017	Maize	endoplasmic reticulum, vacuole	50.52	33.11
GSMUA_Achr5P05580_001	Banana	cytosol	51.03	25.26
GSMUA_Achr8P23380_001	Banana	cytosol	49.48	24.87
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	47.94	13.7
GSMUA_Achr5P03050_001	Banana	nucleus	45.88	12.82
GSMUA_Achr2P15900_001	Banana	nucleus	45.88	10.71
GSMUA_Achr10P...	Banana	nucleus	45.88	10.7

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr7G04880_001
EnsemblPlants:GSMUA_Achr7P04880_001	EnsemblPlants:GSMUA_Achr7T04880_001	InterPro:IPR002130	InterPro:IPR029000	UniProt:M0TES8	PFAM:PF00160
PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF309
SUPFAM:SSF50891	UniParc:UPI000294D90B	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase CYP20-1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G04880_001]

Coordinates

chr7:+:3664058..3665090

Molecular Weight (calculated)

21277.7 Da

IEP (calculated)

8.797

GRAVY (calculated)

-0.101

Length

194 amino acids

Sequence
(BLAST)

001: MASSSFSSNT LCRWFQAEEL KKVTSKVYFD IEIAGKPVGR IIMGLFGKTV PKTAENFRAI CTGEKGRDKY GVRLYYKGST FHRIIPHFMI QGGDIVFGNG
101: RGIDNIYDEP FADENFKLNH TGPGLLSMAN AGPDTNGCQF FITTVKLTRL DGKHVVFGEV LSGMDVVYKI EAVGQASGVP RSRVVIAESG ELPL

Best Arabidopsis Sequence Match ( AT5G58710.1 )
(BLAST)

001: MASSVTLLLW SLLLLGTLSA IQAKKSKENL KEITHKVYFD VEIDGKAAGR IVMGLFGKTV PKTVENFRAL CTGEKGIGKN GKALHYKGSS FHRIIPSFML
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL

Arabidopsis Description

CYP20-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UBF4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.