CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 9
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97867

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29960.1	KRG97867	AT1G13980.1	10715321

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30309	Soybean	endoplasmic reticulum	97.06	97.06
CDY61026	Canola	endoplasmic reticulum	87.25	88.56
CDX80340	Canola	endoplasmic reticulum	88.24	88.24
CDY52123	Canola	endoplasmic reticulum	88.24	88.24
Bra006748.1-P	Field mustard	endoplasmic reticulum	86.76	88.06
CDX71155	Canola	endoplasmic reticulum	86.76	88.06
CDY55458	Canola	endoplasmic reticulum	86.27	87.56
Bra018353.1-P	Field mustard	endoplasmic reticulum	85.78	87.06
CDY58941	Canola	endoplasmic reticulum	85.78	87.06
AT5G58710.1	Thale cress	endoplasmic reticulum	86.76	86.76
AT2G29960.1	Thale cress	endoplasmic reticulum	85.29	86.57
Bra002623.1-P	Field mustard	cytosol	82.84	86.22
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	60.29	71.51
KRH51416	Soybean	cytosol	59.8	70.93
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	59.31	70.35
KRH29120	Soybean	endoplasmic reticulum, nucleus	58.82	69.77
GSMUA_Achr7P04880_001	Banana	cytosol	65.2	68.56
KRH68802	Soybean	cytosol	57.84	67.43
Os06t0708400-01	Rice	plasma membrane	68.63	67.31
KRG97056	Soybean	cytosol	57.35	66.86
KRH31143	Soybean	endoplasmic reticulum	75.49	64.71
OQU77068	Sorghum	endoplasmic reticulum	67.16	64.32
KRG97736	Soybean	endoplasmic reticulum	73.53	63.83
EER88931	Sorghum	endoplasmic reticulum	62.75	57.92
EER88932	Sorghum	endoplasmic reticulum	61.76	57.01
KRH13330	Soybean	endoplasmic reticulum, nucleus	48.04	54.14
KRH37809	Soybean	nucleus	48.53	51.03
KRH20677	Soybean	cytosol	45.59	50.82
KRH60706	Soybean	endoplasmic reticulum	56.37	49.57
KRH24294	Soybean	endoplasmic reticulum	56.37	48.73
KRH29272	Soybean	endoplasmic reticulum	56.37	48.73
KRG93128	Soybean	nucleus, plastid	59.31	47.83
KRH36359	Soybean	nucleus, plastid	58.82	47.81
KRH33684	Soybean	nucleus, plastid	57.35	44.49
KRG96627	Soybean	nucleus, plastid	56.37	44.23
KRH68358	Soybean	plastid	46.57	40.25
Zm00001d014731_P017	Maize	endoplasmic reticulum, vacuole	53.43	36.82
KRH57738	Soybean	cytosol, nucleus	50.98	28.89
KRH50243	Soybean	cytosol	50.98	28.81
KRH04660	Soybean	cytosol, nucleus	50.49	28.61
KRH71172	Soybean	cytosol	50.49	28.53
KRG95597	Soybean	nucleus	55.88	17.3
KRH67275	Soybean	nucleus	55.88	17.07
KRH61803	Soybean	nucleus	44.12	10.68
KRH52477	Soybean	nucleus	43.63	10.47
KRH15996	Soybean	nucleus	43.14	10.37

Protein Annotations

EntrezGene:100305485	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02010865	EMBL:BT089090	UniProt:C6SV97
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_18G062900	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000
EnsemblPlants:KRG98290	ProteinID:KRG98290	ProteinID:KRG98290.1	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153
ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF384	SUPFAM:SSF50891	SignalP:SignalP-noTM
UniParc:UPI0001890D5B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:5757258..5760418

Molecular Weight (calculated)

21955.6 Da

IEP (calculated)

9.739

GRAVY (calculated)

-0.149

Length

204 amino acids

Sequence
(BLAST)

001: MAKTTSLLLF TLLLFGTLAL IQAKKSKEDL KEVTHKVYFD VEINGKEAGR IVMGLYGKAV PKTAENFRAL CTGEKGTGKS GKPLHYKGSS FHRIIPSFML
101: QGGDFTQGNG MGGESIYGEK FADENFKLKH TGPGLLSMAN AGPNTNGSQF FITTVTTSWL DGRHVVFGKV LSGMDVVYKI EAEGTQSGTP KSKVVIVDSG
201: ELPL

Best Arabidopsis Sequence Match ( AT2G29960.1 )
(BLAST)

001: MAKASFILLG TLFLFGAIAS IQAKEDLKEV THKVYFDVEI DGKSAGRVVI GLFGKAVPKT AENFRALCTG EKGVGKSGKP LHYKGSKFHR IIPSFMIQGG
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L

Arabidopsis Description

CYP19-4Peptidyl-prolyl cis-trans isomerase CYP19-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDP4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.