Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 9
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KRG97867 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29960.1 | KRG97867 | AT1G13980.1 | 10715321 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG98290 | Soybean | endoplasmic reticulum | 97.06 | 97.06 |
| CDY52123 | Canola | endoplasmic reticulum | 88.24 | 88.24 |
| CDX80340 | Canola | endoplasmic reticulum | 88.24 | 88.24 |
| CDY61026 | Canola | endoplasmic reticulum | 86.76 | 88.06 |
| CDX71155 | Canola | endoplasmic reticulum | 86.27 | 87.56 |
| Bra006748.1-P | Field mustard | endoplasmic reticulum | 86.27 | 87.56 |
| CDY55458 | Canola | endoplasmic reticulum | 86.27 | 87.56 |
| Bra018353.1-P | Field mustard | endoplasmic reticulum | 85.78 | 87.06 |
| CDY58941 | Canola | endoplasmic reticulum | 85.78 | 87.06 |
| AT5G58710.1 | Thale cress | endoplasmic reticulum | 86.76 | 86.76 |
| AT2G29960.1 | Thale cress | endoplasmic reticulum | 85.29 | 86.57 |
| Bra002623.1-P | Field mustard | cytosol | 82.84 | 86.22 |
| KRH60719 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 60.29 | 71.51 |
| KRH51416 | Soybean | cytosol | 59.8 | 70.93 |
| KRH29120 | Soybean | endoplasmic reticulum, nucleus | 58.82 | 69.77 |
| KRH24153 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 58.33 | 69.19 |
| GSMUA_Achr7P04880_001 | Banana | cytosol | 65.2 | 68.56 |
| KRH68802 | Soybean | cytosol | 57.84 | 67.43 |
| KRG97056 | Soybean | cytosol | 57.35 | 66.86 |
| Os06t0708400-01 | Rice | plasma membrane | 68.14 | 66.83 |
| OQU77068 | Sorghum | endoplasmic reticulum | 66.67 | 63.85 |
| KRH31143 | Soybean | endoplasmic reticulum | 74.02 | 63.45 |
| KRG97736 | Soybean | endoplasmic reticulum | 73.04 | 63.4 |
| EER88931 | Sorghum | endoplasmic reticulum | 62.25 | 57.47 |
| EER88932 | Sorghum | endoplasmic reticulum | 61.27 | 56.56 |
| KRH13330 | Soybean | endoplasmic reticulum, nucleus | 48.53 | 54.7 |
| KRH37809 | Soybean | nucleus | 49.02 | 51.55 |
| KRH20677 | Soybean | cytosol | 46.08 | 51.37 |
| KRH24294 | Soybean | endoplasmic reticulum | 56.86 | 49.15 |
| KRH60706 | Soybean | endoplasmic reticulum | 55.88 | 49.14 |
| KRH29272 | Soybean | endoplasmic reticulum | 55.88 | 48.31 |
| KRG93128 | Soybean | nucleus, plastid | 57.84 | 46.64 |
| KRH36359 | Soybean | nucleus, plastid | 57.35 | 46.61 |
| KRH33684 | Soybean | nucleus, plastid | 56.86 | 44.11 |
| KRG96627 | Soybean | nucleus, plastid | 55.88 | 43.85 |
| KRH68358 | Soybean | plastid | 46.08 | 39.83 |
| Zm00001d014731_P017 | Maize | endoplasmic reticulum, vacuole | 51.96 | 35.81 |
| KRH57738 | Soybean | cytosol, nucleus | 50.0 | 28.33 |
| KRH04660 | Soybean | cytosol, nucleus | 49.51 | 28.06 |
| KRH71172 | Soybean | cytosol | 49.51 | 27.98 |
| KRH50243 | Soybean | cytosol | 49.02 | 27.7 |
| KRG95597 | Soybean | nucleus | 54.41 | 16.84 |
| KRH67275 | Soybean | nucleus | 54.9 | 16.77 |
| KRH61803 | Soybean | nucleus | 44.12 | 10.68 |
| KRH52477 | Soybean | nucleus | 43.63 | 10.47 |
| KRH15996 | Soybean | nucleus | 43.14 | 10.37 |
Protein Annotations
| EntrezGene:100792140 | MapMan:18.12.1 | Gene3D:2.40.100.10 | UniProt:A0A0R0HSJ5 | EMBL:ACUP02006953 | InterPro:Cyclophilin-like_dom_sf |
| InterPro:Cyclophilin-type_PPIase | InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | EnsemblPlantsGene:GLYMA_11G175200 | GO:GO:0000413 | GO:GO:0003674 |
| GO:GO:0003755 | GO:GO:0003824 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016853 | GO:GO:0019538 | InterPro:IPR002130 | InterPro:IPR029000 | EnsemblPlants:KRH30309 |
| ProteinID:KRH30309 | ProteinID:KRH30309.1 | PFAM:PF00160 | PIRSF:PIRSF001467 | PRINTS:PR00153 | ScanProsite:PS00170 |
| PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF384 | SUPFAM:SSF50891 | SignalP:SignalP-noTM | UniParc:UPI000189D790 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:+:19229203..19235404
Molecular Weight (calculated)
21945.5 Da
IEP (calculated)
9.369
GRAVY (calculated)
-0.119
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTTSLLLF TLLLFGTLAL IQAKKSKEDL KEVTHKVYFD VEINGKEAGR IVMGLFGKAV PKTAENFRAL CTGEKGTGKS GKPLHYKGSS FHRIIPSFML
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGLLSMAN AGPDTNGSQF FITTVTTSWL DGRHVVFGRV LSGLDVVYNI EAEGTQSGTP KSKVVIVDSG
201: ELPL
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGLLSMAN AGPDTNGSQF FITTVTTSWL DGRHVVFGRV LSGLDVVYNI EAEGTQSGTP KSKVVIVDSG
201: ELPL
001: MAKASFILLG TLFLFGAIAS IQAKEDLKEV THKVYFDVEI DGKSAGRVVI GLFGKAVPKT AENFRALCTG EKGVGKSGKP LHYKGSKFHR IIPSFMIQGG
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
Arabidopsis Description
CYP19-4Peptidyl-prolyl cis-trans isomerase CYP19-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDP4]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.