CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57738	Soybean	cytosol, nucleus	96.94	96.94
KRH50243	Soybean	cytosol	81.94	81.72
KRH71172	Soybean	cytosol	80.56	80.33
AT2G15790.1	Thale cress	cytosol	74.17	73.96
Bra015237.1-P	Field mustard	cytosol	73.61	73.41
CDY36653	Canola	cytosol	73.61	73.41
CDX71247	Canola	cytosol	73.06	72.85
GSMUA_Achr8P23380_001	Banana	cytosol	77.5	72.28
GSMUA_Achr5P05580_001	Banana	cytosol	76.94	70.66
TraesCS7D01G176900.1	Wheat	cytosol	73.33	70.4
EER88080	Sorghum	cytosol	75.28	69.67
Zm00001d037189_P004	Maize	extracellular	75.0	69.41
TraesCS7A01G175300.1	Wheat	cytosol	73.06	69.39
TraesCS7B01G080700.1	Wheat	cytosol	73.06	69.21
HORVU7Hr1G036160.1	Barley	cytosol	73.06	69.21
Os06t0216800-01	Rice	cytosol	76.11	69.19
EES05845	Sorghum	cytosol	73.89	67.17
Os02t0761100-01	Rice	cytosol	73.89	66.0
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	30.83	64.53
TraesCS6A01G313700.1	Wheat	cytosol	71.67	63.55
TraesCS6D01G293100.1	Wheat	cytosol	71.39	62.99
TraesCS6B01G343800.1	Wheat	cytosol	71.39	62.99
KRG97056	Soybean	cytosol	30.56	62.86
KRH29120	Soybean	endoplasmic reticulum, nucleus	29.72	62.21
KRH68802	Soybean	cytosol	30.0	61.71
KRH51416	Soybean	cytosol	28.89	60.47
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	28.89	60.47
HORVU6Hr1G077290.1	Barley	plastid	71.11	56.26
KRH13330	Soybean	endoplasmic reticulum, nucleus	26.94	53.59
KRH37809	Soybean	nucleus	27.22	50.52
KRG98290	Soybean	endoplasmic reticulum	28.61	50.49
KRH20677	Soybean	cytosol	25.28	49.73
KRH30309	Soybean	endoplasmic reticulum	28.06	49.51
KRH60706	Soybean	endoplasmic reticulum	27.5	42.67
KRG97736	Soybean	endoplasmic reticulum	27.5	42.13
KRH31143	Soybean	endoplasmic reticulum	27.5	41.6
KRH29272	Soybean	endoplasmic reticulum	27.22	41.53
KRG93128	Soybean	nucleus, plastid	28.89	41.11
KRH24294	Soybean	endoplasmic reticulum	26.94	41.1
KRH36359	Soybean	nucleus, plastid	27.78	39.84
KRG96627	Soybean	nucleus, plastid	27.22	37.69
KRH33684	Soybean	nucleus, plastid	26.94	36.88
KRH68358	Soybean	plastid	22.78	34.75
KRG95597	Soybean	nucleus	40.83	22.31
KRH67275	Soybean	nucleus	39.44	21.26
KRH61803	Soybean	nucleus	33.06	14.12
KRH52477	Soybean	nucleus	32.5	13.76
KRH15996	Soybean	nucleus	30.56	12.96

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100805889	MapMan:18.12.1	Gene3D:2.40.100.10	UniProt:A0A0R4J5S0	EMBL:ACUP02010472
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_17G177600	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR011990
InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR029000	EnsemblPlants:KRH04660	ProteinID:KRH04660	ProteinID:KRH04660.1
PFAM:PF00160	PFAM:PF00515	PRINTS:PR00153	PFscan:PS50005	PFscan:PS50072	PFscan:PS50293
PANTHER:PTHR11071	PANTHER:PTHR11071:SF310	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF50891	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI000189D7CC	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:-:19104479..19109551

Molecular Weight (calculated)

40122.7 Da

IEP (calculated)

6.130

GRAVY (calculated)

-0.509

Length

360 amino acids

Sequence
(BLAST)

001: MVNPRCFLDI TIGGELEGRI VVELFHDVVP KTAENFRALC TGEKGIGPNT GVPLHYKGMC FHRVIKGFMI QGGDISAGDG TGGESIYGAK FEDENLEMKH
101: ERKGTLSMAN AGPNTNGSQF FITTTRTPHL DGKHVVFGKV LKGMGIVRSV EHVVTGENDR PTQDVVVVDC GEIAEGEDDG VVNFFKDGDT YPDWPADLDV
201: KPDELSWWMS AVDAIKTLGN EQYKKLDYKM ALRKYRKALR YLDVCWEKED IDQENSAALR KTKSQIFTNS SACKLKLGDL QGALLDSDFA MHDGDNAKAL
301: FRKGQAYMLL NDLDAAVESF KKALELEPND GGIKKEYATA RRRVADRRDQ EKKAYSRMFK

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.