Factsheet for Zm00001d037189_P004

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88080	Sorghum	cytosol	95.89	95.89
Os06t0216800-01	Rice	cytosol	87.92	86.36
TraesCS7D01G176900.1	Wheat	cytosol	82.52	85.6
TraesCS7A01G175300.1	Wheat	cytosol	83.29	85.49
TraesCS7B01G080700.1	Wheat	cytosol	83.29	85.26
HORVU7Hr1G036160.1	Barley	cytosol	82.78	84.74
GSMUA_Achr8P23380_001	Banana	cytosol	80.21	80.83
GSMUA_Achr5P05580_001	Banana	cytosol	79.95	79.34
Solyc01g108340.2.1	Tomato	cytosol	72.24	77.62
VIT_03s0063g01030.t01	Wine grape	cytosol	71.98	77.56
PGSC0003DMT400066358	Potato	cytosol	71.72	77.07
KRH71172	Soybean	cytosol	71.47	77.01
KRH50243	Soybean	cytosol	71.21	76.73
KRH57738	Soybean	cytosol, nucleus	69.92	75.56
KRH04660	Soybean	cytosol, nucleus	69.41	75.0
AT2G15790.1	Thale cress	cytosol	67.1	72.3
Bra015237.1-P	Field mustard	cytosol	66.32	71.47
CDY36653	Canola	cytosol	66.32	71.47
CDX71247	Canola	cytosol	66.07	71.19
PGSC0003DMT400026079	Potato	cytosol	63.5	68.42
Solyc02g090480.2.1	Tomato	cytosol	62.72	67.59
Zm00001d050635_P001	Maize	plastid	29.56	67.25
Zm00001d016661_P001	Maize	plastid	29.56	66.86
Zm00001d016660_P001	Maize	cytosol	29.56	66.86
Zm00001d009267_P001	Maize	cytosol	1.8	63.64
Zm00001d030339_P001	Maize	mitochondrion	25.45	54.1
Zm00001d022631_P002	Maize	plastid	26.22	47.22
Zm00001d014732_P002	Maize	mitochondrion	26.48	46.82
Zm00001d011104_P001	Maize	plastid	25.71	40.32
Zm00001d035761_P001	Maize	plastid	25.96	40.24
Zm00001d036442_P001	Maize	mitochondrion	26.99	37.91
Zm00001d008209_P001	Maize	plastid	25.71	35.59
Zm00001d014731_P017	Maize	endoplasmic reticulum, vacuole	24.16	31.76
Zm00001d013010_P002	Maize	plastid	23.91	30.19
Zm00001d007826_P002	Maize	nucleus	33.68	19.55
Zm00001d018944_P004	Maize	nucleus	32.65	18.01
Zm00001d053620_P016	Maize	nucleus	28.53	13.55
Zm00001d015729_P005	Maize	nucleus	27.76	12.57

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100383555	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:AQK83247.1	EMBL:BT067575
UniProt:C0PH06	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000003
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006457
GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010050	GO:GO:0010582	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR029000	PFAM:PF00160	PFAM:PF00515
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50005	PFscan:PS50072	PFscan:PS50293	PANTHER:PTHR11071
PANTHER:PTHR11071:SF310	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF50891	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI000195CDFE	EnsemblPlantsGene:Zm00001d037189	EnsemblPlants:Zm00001d037189_P004	EnsemblPlants:Zm00001d037189_T004
SEG:seg	:	:	:	:	:

Description

Peptidyl-prolyl cis-trans isomerase CYP40

Coordinates

chr6:+:115183236..115189551

Molecular Weight (calculated)

42755.3 Da

IEP (calculated)

5.770

GRAVY (calculated)

-0.570

Length

389 amino acids

Sequence
(BLAST)

001: MEGRGAEQAP EAAAEVKNPR CFMDVTIGGE MEGRIVVELY ASVVPRTAEN FRALCTGEKG IGAASGKPLH FKGSCFHRVI KGFMIQGGDT TAGDGTGGES
101: IYGSKFEDEN FVLKHERKGM LSMANSGPNT NGSQFFITTT RTPHLDGKHV VFGRVMKGMG VVRSIEHVSV GEADCPTLEV KIVDCGELPE GADDGVVNFF
201: KDGDTYPDWP NDLEEKPAEV SWWMDAVESA KAYGNDNFKK QDYKAALRKY RKALRYLDLC WEKEEIDEDK STALRKTKSI ILTNSSACKL KLGDSSGALL
301: DADFALRERE GNAKAFFRQG QAHIALNDID AAVESFKQAL ELEPNDAGIK RELAAAKKKI ADRRDQERKA FARIFQSSGK SDKSNEENN

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.