Factsheet for Solyc01g108340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066358	Potato	cytosol	98.89	98.89
VIT_03s0063g01030.t01	Wine grape	cytosol	85.64	85.87
KRH71172	Soybean	cytosol	82.6	82.83
KRH50243	Soybean	cytosol	82.32	82.55
GSMUA_Achr8P23380_001	Banana	cytosol	80.39	75.39
TraesCS7D01G176900.1	Wheat	cytosol	77.07	74.4
TraesCS7A01G175300.1	Wheat	cytosol	76.8	73.35
EER88080	Sorghum	cytosol	78.73	73.26
HORVU7Hr1G036160.1	Barley	cytosol	76.8	73.16
TraesCS7B01G080700.1	Wheat	cytosol	76.8	73.16
Zm00001d037189_P004	Maize	extracellular	77.62	72.24
Os06t0216800-01	Rice	cytosol	79.01	72.22
GSMUA_Achr5P05580_001	Banana	cytosol	78.18	72.19
Solyc02g090480.2.1	Tomato	cytosol	70.44	70.64
EES05845	Sorghum	cytosol	75.69	69.19
Os02t0761100-01	Rice	cytosol	76.52	68.73
TraesCS6A01G313700.1	Wheat	cytosol	74.31	66.26
TraesCS6D01G293100.1	Wheat	cytosol	74.31	65.93
TraesCS6B01G343800.1	Wheat	cytosol	74.03	65.69
Solyc11g006070.1.1	Tomato	cytosol, extracellular, unclear	27.07	64.05
Solyc10g054910.1.1	Tomato	extracellular, unclear	28.73	60.47
Solyc01g111170.2.1	Tomato	extracellular, nucleus	28.18	59.65
HORVU6Hr1G077290.1	Barley	plastid	73.76	58.68
Solyc01g096520.2.1	Tomato	cytosol, nucleus, plastid	26.24	50.0
Solyc06g076970.2.1	Tomato	nucleus	28.18	49.28
Solyc06g051650.2.1	Tomato	endoplasmic reticulum	27.62	44.44
Solyc01g111360.2.1	Tomato	endoplasmic reticulum	26.52	42.11
Solyc01g009990.2.1	Tomato	plastid	27.9	40.73
Solyc09g065720.2.1	Tomato	nucleus	35.91	19.7
Solyc08g067090.2.1	Tomato	nucleus	29.28	13.1

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000003	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006457	GO:GO:0006464	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010050	GO:GO:0010582	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR029000
UniProt:K4B350	PFAM:PF00160	PFAM:PF00515	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50005
PFscan:PS50072	PFscan:PS50293	PANTHER:PTHR11071	PANTHER:PTHR11071:SF310	SMART:SM00028	SUPFAM:SSF48452
SUPFAM:SSF50891	EnsemblPlantsGene:Solyc01g108340.2	EnsemblPlants:Solyc01g108340.2.1	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1
InterPro:TPR_repeat	UniParc:UPI000276824A	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:95687217..95691841

Molecular Weight (calculated)

40349.8 Da

IEP (calculated)

6.413

GRAVY (calculated)

-0.560

Length

362 amino acids

Sequence
(BLAST)

001: MTRPRCYLDI SIGGELEGRI VVELYNDVVP KTAENFRALC TGEKGIGPNT GVPLHYKGNC FHRVIKSFMV QGGDISAGDG TGGESIYGLK FEDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFARV IKGMGVVRSM EHVTTGDNDC PTVDVSIADC GEIPEGADDG ITNFFKDGDL YPDWPADLDN
201: NTDDLPWWVT ALESIKAFGN ENFKKQDYKM ALRKYRKALR YLDICWEKEG IDEDRSAYLR RMKSQIFTNS SASKLKLGDL KGALLDADFA MRDGENNAKA
301: LFRQGQAHMA LNDIDAAVES FKKALELEPN DGGIKNQLAA AKKKIADRRD KERKAFSRMF QN

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.