CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0761100-01	Rice	cytosol	83.59	82.13
EER88080	Sorghum	cytosol	76.77	78.15
TraesCS6D01G293100.1	Wheat	cytosol	79.04	76.72
TraesCS6A01G313700.1	Wheat	cytosol	78.54	76.6
TraesCS6B01G343800.1	Wheat	cytosol	78.79	76.47
PGSC0003DMT400066358	Potato	cytosol	69.7	76.24
Solyc01g108340.2.1	Tomato	cytosol	69.19	75.69
GSMUA_Achr8P23380_001	Banana	cytosol	73.74	75.65
KRH57738	Soybean	cytosol, nucleus	68.43	75.28
KRH50243	Soybean	cytosol	67.93	74.52
VIT_03s0063g01030.t01	Wine grape	cytosol	67.68	74.24
KRH71172	Soybean	cytosol	67.68	74.24
GSMUA_Achr5P05580_001	Banana	cytosol	73.48	74.23
KRH04660	Soybean	cytosol, nucleus	67.17	73.89
AT2G15790.1	Thale cress	cytosol	64.14	70.36
Bra015237.1-P	Field mustard	cytosol	62.88	68.98
CDY36653	Canola	cytosol	62.88	68.98
CDX71247	Canola	cytosol	62.12	68.14
HORVU6Hr1G077290.1	Barley	plastid	78.03	67.91
PGSC0003DMT400026079	Potato	cytosol	61.87	67.87
Solyc02g090480.2.1	Tomato	cytosol	61.11	67.04
EES04388	Sorghum	cytosol	26.52	61.4
EES05164	Sorghum	cytosol	26.52	61.05
EER96387	Sorghum	cytosol	25.76	58.29
EER91725	Sorghum	cytosol	26.26	54.74
EER97099	Sorghum	endoplasmic reticulum	26.26	48.15
OQU77069	Sorghum	mitochondrion	26.01	46.82
OQU77068	Sorghum	endoplasmic reticulum	24.24	45.07
EER90660	Sorghum	plastid	22.22	43.78
EES00602	Sorghum	plastid	26.01	42.56
EER88931	Sorghum	endoplasmic reticulum	23.23	41.63
EER88932	Sorghum	endoplasmic reticulum	22.98	41.18
EES17522	Sorghum	plastid	25.25	40.16
EER95944	Sorghum	nucleus	30.56	18.67
OQU84603	Sorghum	nucleus	27.27	12.98

Protein Annotations

Gene3D:1.25.40.10	MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:8078906	UniProt:C5XSS4	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlants:EES05845	ProteinID:EES05845	ProteinID:EES05845.1
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:IPR029000
PFAM:PF00160	PFAM:PF07719	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50005	PFscan:PS50072
PFscan:PS50293	PANTHER:PTHR11071	PANTHER:PTHR11071:SF310	SMART:SM00028	EnsemblPlantsGene:SORBI_3004G306700	SUPFAM:SSF48452
SUPFAM:SSF50891	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI0001A85970
RefSeq:XP_002452869.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:64477703..64482795

Molecular Weight (calculated)

43622.4 Da

IEP (calculated)

5.086

GRAVY (calculated)

-0.518

Length

396 amino acids

Sequence
(BLAST)

001: MDDGGEGSGA AGAEAVAVEE VVARNPRCFL DVSIGGELEG RIVVELYASV VPRTAENFRA LCTGEKGVGA ETGVKLHYKG SCFHRIVKGF MVQGGDITVG
101: DGTGGQSIYG LNFEDENFTL KHERKGMLSM ANAGPNTNGS QFFITTTRTP HLDGNHVVFG RAIKGMGVVR AMEHISVDEA DRPTDDIVIV DCGELPEGSN
201: DGVVNFFKDG DMYPDWPIDL DEKPAEISWW MDAVESAKAF GNESFKKQDY KTALRKYRKS MRYLDLCWEK EDIDEERSTA LRKTKSIIFT NSSACKLKLG
301: DFEGALLDAD FALREREDNA KAFFRQGQVR MALNHIDAAV ESFKQALELE PNDGGIKREL AAAKKKISDR RDREKKAFSK LFQPSGGSEK GDKENS

Best Arabidopsis Sequence Match ( AT2G15790.1 )
(BLAST)

001: MGRSKCFMDI SIGGELEGRI VIELYDDVVP KTAENFRLLC TGEKGLGPNT GVPLHYKGNR FHRVIKGFMI QGGDISANDG TGGESIYGLK FDDENFELKH
101: ERKGMLSMAN SGPNTNGSQF FITTTRTSHL DGKHVVFGRV TKGMGVVRSI EHVSIEEQSC PSQDVVIHDC GEIPEGADDG ICDFFKDGDV YPDWPIDLNE
201: SPAELSWWME TVDFVKAHGN EHFKKQDYKM ALRKYRKALR YLDICWEKEG IDEETSTALR KTKSQIFTNS AACKLKFGDA KGALLDTEFA MRDEDNNVKA
301: LFRQGQAYMA LNNVDAAAES LEKALQFEPN DAGIKKEYAA VMKKIAFRDN EEKKQYRKMF V

Arabidopsis Description

CYP40Peptidyl-prolyl cis-trans isomerase CYP40 [Source:UniProtKB/Swiss-Prot;Acc:Q9C566]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.