CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G478800.1	Wheat	plastid	89.05	90.4
TraesCS5A01G467000.1	Wheat	golgi, unclear	88.56	89.9
Os03t0811600-01	Rice	nucleus, plastid	91.04	89.71
TraesCS5D01G479900.1	Wheat	nucleus	88.06	89.39
HORVU5Hr1G111410.1	Barley	plastid	87.56	88.89
VIT_13s0084g00620.t01	Wine grape	cytosol	80.1	85.19
KRH13330	Soybean	endoplasmic reticulum, nucleus	76.12	84.53
KRH37809	Soybean	nucleus	81.09	84.02
Solyc01g096520.2.1	Tomato	cytosol, nucleus, plastid	78.61	83.16
PGSC0003DMT400013826	Potato	cytosol, mitochondrion	78.11	82.63
KRH20677	Soybean	cytosol	74.63	81.97
CDX93307	Canola	plastid	82.09	80.49
AT2G38730.1	Thale cress	cytosol	79.6	80.4
CDX91486	Canola	cytosol	79.6	80.0
Bra005088.1-P	Field mustard	plastid	81.09	79.9
CDX74892	Canola	cytosol, plastid	80.6	79.41
GSMUA_Achr2P00020_001	Banana	plastid	81.59	78.47
Bra017105.1-P	Field mustard	plastid	79.1	76.81
CDY18371	Canola	cytosol, plastid	78.61	76.33
EES04388	Sorghum	cytosol	49.25	57.89
EER96387	Sorghum	cytosol	49.25	56.57
EES05164	Sorghum	cytosol	47.76	55.81
Zm00001d013010_P002	Maize	plastid	84.58	55.19
EER91725	Sorghum	cytosol	42.29	44.74
OQU77069	Sorghum	mitochondrion	47.76	43.64
OQU77068	Sorghum	endoplasmic reticulum	45.27	42.72
EES00602	Sorghum	plastid	50.25	41.74
EER97099	Sorghum	endoplasmic reticulum	44.28	41.2
EES17522	Sorghum	plastid	47.76	38.55
EER88931	Sorghum	endoplasmic reticulum	41.79	38.01
EER88932	Sorghum	endoplasmic reticulum	40.8	37.1
EER88080	Sorghum	cytosol	50.75	26.22
EES05845	Sorghum	cytosol	43.78	22.22
EER95944	Sorghum	nucleus	44.78	13.89
OQU84603	Sorghum	nucleus	39.3	9.5

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:8057395	UniProt:C5WVZ8	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlants:EER90660	ProteinID:EER90660	ProteinID:EER90660.1	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005829	GO:GO:0005886	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538
InterPro:IPR002130	InterPro:IPR029000	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF58	EnsemblPlantsGene:SORBI_3001G041200	SUPFAM:SSF50891	unigene:Sbi.6965
UniParc:UPI0001A82011	RefSeq:XP_002463662.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:3057449..3061041

Molecular Weight (calculated)

21608.9 Da

IEP (calculated)

8.292

GRAVY (calculated)

-0.186

Length

201 amino acids

Sequence
(BLAST)

001: MASGGAAISA GPTPPSATAT AVEWHQRPPN PKNPVVFFDV TIGSIPAGRI KMELFADIAP KTAENFRQFC TGEHRKNALP QGYKGCQFHR VIKDFMIQGG
101: DFLKNDGTGC TSIYGTKFDD ENFIAKHTGP GLLSMANSGI NSNGSQFFIT CAKCDWLDNK HVVFGRVLGD GLLVVRKIEN VATGANNKPK LACIISECGE
201: M

Best Arabidopsis Sequence Match ( AT2G38730.1 )
(BLAST)

001: MNSGGGIVAA AAPSSGGGNV EWHVRPPNPK NPVVFFDVSI GGIPAGRIKM ELFADIAPKT AENFRQFCTG ELRKAGKPLG YKECQFHRVI KDFMVQSGDF
101: LKNDGSGCMS IYGHKFEDEN FTAKHTGPGL LSMANSGPNT NGCQFFITCA KCDWLDNKHV VFGRVLGDGL LVMRKIENVA IGPNNRPKLA VVITECGEM

Arabidopsis Description

CYP22Peptidyl-prolyl cis-trans isomerase CYP22 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.