CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37809	Soybean	nucleus	95.03	88.66
VIT_13s0084g00620.t01	Wine grape	cytosol	89.5	85.71
KRH20677	Soybean	cytosol	86.19	85.25
Solyc01g096520.2.1	Tomato	cytosol, nucleus, plastid	83.98	80.0
PGSC0003DMT400013826	Potato	cytosol, mitochondrion	83.43	79.47
TraesCS5A01G467000.1	Wheat	golgi, unclear	85.64	78.28
TraesCS5B01G478800.1	Wheat	plastid	85.64	78.28
AT2G38730.1	Thale cress	cytosol	85.64	77.89
HORVU5Hr1G111410.1	Barley	plastid	85.08	77.78
TraesCS5D01G479900.1	Wheat	nucleus	85.08	77.78
CDX91486	Canola	cytosol	85.64	77.5
Bra005088.1-P	Field mustard	plastid	86.19	76.47
EER90660	Sorghum	plastid	84.53	76.12
CDX74892	Canola	cytosol, plastid	85.64	75.98
CDX93307	Canola	plastid	85.64	75.61
Os03t0811600-01	Rice	nucleus, plastid	84.53	75.0
GSMUA_Achr2P00020_001	Banana	plastid	86.19	74.64
Bra017105.1-P	Field mustard	plastid	85.08	74.4
CDY18371	Canola	cytosol, plastid	84.53	73.91
KRH29120	Soybean	endoplasmic reticulum, nucleus	56.35	59.3
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	55.8	58.72
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	54.7	57.56
KRH51416	Soybean	cytosol	54.7	57.56
KRH68802	Soybean	cytosol	55.25	57.14
KRG97056	Soybean	cytosol	53.59	55.43
KRH30309	Soybean	endoplasmic reticulum	54.7	48.53
KRG98290	Soybean	endoplasmic reticulum	54.14	48.04
Zm00001d013010_P002	Maize	plastid	72.93	42.86
KRG97736	Soybean	endoplasmic reticulum	52.49	40.43
KRH31143	Soybean	endoplasmic reticulum	51.93	39.5
KRG93128	Soybean	nucleus, plastid	52.49	37.55
KRH36359	Soybean	nucleus, plastid	51.38	37.05
KRH60706	Soybean	endoplasmic reticulum	46.96	36.64
KRH24294	Soybean	endoplasmic reticulum	45.86	35.17
KRG96627	Soybean	nucleus, plastid	50.28	35.0
KRH29272	Soybean	endoplasmic reticulum	44.75	34.32
KRH33684	Soybean	nucleus, plastid	49.72	34.22
KRH68358	Soybean	plastid	41.99	32.2
KRH57738	Soybean	cytosol, nucleus	54.14	27.22
KRH04660	Soybean	cytosol, nucleus	53.59	26.94
KRH71172	Soybean	cytosol	51.93	26.04
KRH50243	Soybean	cytosol	51.93	26.04
KRG95597	Soybean	nucleus	52.49	14.42
KRH67275	Soybean	nucleus	51.93	14.07
KRH61803	Soybean	nucleus	44.75	9.61
KRH52477	Soybean	nucleus	44.2	9.41
KRH15996	Soybean	nucleus	42.54	9.07

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	UniProt:A0A0R0GBI4	EMBL:ACUP02009694	EMBL:ACUP02009695	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_15G231800	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853
GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	EnsemblPlants:KRH13330	ProteinID:KRH13330	ProteinID:KRH13330.1
PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF58
SUPFAM:SSF50891	UniParc:UPI0006EE0D83	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:43588806..43598902

Molecular Weight (calculated)

19906.3 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.102

Length

181 amino acids

Sequence
(BLAST)

001: MHGCGVRPPN LKNPIVFFDV TIGNIPAGRI KMELFADIAP KTAENFRQFC TGEYRKVGLP VGYKACQFHR VIKDFMIQDG DFVKGDGSGC VSIYGLKFDD
101: ENFTAKHTGP GLLSMANSGP NTNGCQFFIT CAKCDWLDKK HVVFGRVLGD GLLVVRKIEN VATRPNNRPK LACVIAECGE M

Best Arabidopsis Sequence Match ( AT2G38730.1 )
(BLAST)

001: MNSGGGIVAA AAPSSGGGNV EWHVRPPNPK NPVVFFDVSI GGIPAGRIKM ELFADIAPKT AENFRQFCTG ELRKAGKPLG YKECQFHRVI KDFMVQSGDF
101: LKNDGSGCMS IYGHKFEDEN FTAKHTGPGL LSMANSGPNT NGCQFFITCA KCDWLDNKHV VFGRVLGDGL LVMRKIENVA IGPNNRPKLA VVITECGEM

Arabidopsis Description

CYP22Peptidyl-prolyl cis-trans isomerase CYP22 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.