CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11
mitochondrion 1
endoplasmic reticulum 1
extracellular 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH23958
KRH39841
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13120.1	KRH23958	AT4G25200.1	21798944
AT5G13120.1	KRH39841	AT4G25200.1	21798944
AT5G13120.1	KRH14106	AT5G35750.1	18642946
AT5G13120.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36359	Soybean	nucleus, plastid	88.54	89.24
PGSC0003DMT400013412	Potato	extracellular, plastid	65.61	66.94
EES17522	Sorghum	plastid	65.61	66.67
GSMUA_Achr2P21150_001	Banana	plastid	65.61	66.67
Solyc01g009990.2.1	Tomato	plastid	64.82	66.13
Zm00001d035761_P001	Maize	plastid	65.22	65.74
TraesCS1A01G007500.1	Wheat	golgi	63.64	65.71
TraesCS1B01G011100.1	Wheat	plastid	63.64	65.71
TraesCS1D01G000800.2	Wheat	plastid	63.64	65.71
Zm00001d011104_P001	Maize	plastid	64.03	65.32
VIT_01s0146g00110.t01	Wine grape	plastid	67.59	65.27
KRH24153	Soybean	endoplasmic reticulum, mitochondrion, nucleus	43.87	64.53
Os05t0103200-01	Rice	plastid	63.64	64.4
KRH60719	Soybean	cytosol, endoplasmic reticulum, mitochondrion	43.48	63.95
KRH29120	Soybean	endoplasmic reticulum, nucleus	43.08	63.37
CDX78508	Canola	plastid	64.03	63.28
KRH51416	Soybean	cytosol	42.69	62.79
Bra006182.1-P	Field mustard	plastid	63.64	62.65
CDX70495	Canola	plastid	63.64	62.65
AT5G13120.1	Thale cress	plastid	60.87	59.46
KRH68802	Soybean	cytosol	41.11	59.43
KRG98290	Soybean	endoplasmic reticulum	47.83	59.31
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	63.24	59.04
KRG97056	Soybean	cytosol	40.71	58.86
KRH30309	Soybean	endoplasmic reticulum	46.64	57.84
HORVU1Hr1G000710.1	Barley	mitochondrion, plastid	63.64	57.3
KRH13330	Soybean	endoplasmic reticulum, nucleus	37.55	52.49
KRG96627	Soybean	nucleus, plastid	53.36	51.92
KRH37809	Soybean	nucleus	38.34	50.0
KRH20677	Soybean	cytosol	35.97	49.73
KRH31143	Soybean	endoplasmic reticulum	45.85	48.74
KRH33684	Soybean	nucleus, plastid	50.2	48.29
KRG97736	Soybean	endoplasmic reticulum	43.87	47.23
KRH60706	Soybean	endoplasmic reticulum	41.9	45.69
KRH68358	Soybean	plastid	41.11	44.07
KRH29272	Soybean	endoplasmic reticulum	40.32	43.22
KRH24294	Soybean	endoplasmic reticulum	40.32	43.22
KRH57738	Soybean	cytosol, nucleus	41.9	29.44
KRH04660	Soybean	cytosol, nucleus	41.11	28.89
KRH71172	Soybean	cytosol	41.11	28.81
KRH50243	Soybean	cytosol	41.11	28.81
KRG95597	Soybean	nucleus	42.29	16.24
KRH67275	Soybean	nucleus	41.11	15.57
KRH61803	Soybean	nucleus	32.02	9.61
KRH15996	Soybean	nucleus	32.02	9.54
KRH52477	Soybean	nucleus	32.02	9.53

Protein Annotations

MapMan:1.1.8.1.4.5	EntrezGene:100777088	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:ACUP02012781	InterPro:Cyclophilin-like_dom_sf
InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	EnsemblPlantsGene:GLYMA_20G249300	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	UniProt:I1NJE8	InterPro:IPR002130	InterPro:IPR029000
EnsemblPlants:KRG93128	ProteinID:KRG93128	ProteinID:KRG93128.1	PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170
PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383	SUPFAM:SSF50891	UniParc:UPI000233DE91	SEG:seg

Description

hypothetical protein

Coordinates

chr20:-:47814802..47817446

Molecular Weight (calculated)

27105.4 Da

IEP (calculated)

10.090

GRAVY (calculated)

-0.285

Length

253 amino acids

Sequence
(BLAST)

001: MTVTMAAAFT STSATLRLSN VGESRGLQLR KCNPNPNKLK VMGGFGGCSG VAVGVRERKG IGRVRVRVRA SSSSDEAVSA QSKVTQKVFF DVSIGNPVGK
101: LVGRIVIGLY GDDVPQTAEN FRALCTGEKG FGYKGSTFHR VIKDFMIQGG DFDKGNGTGG KSIYGRTFKD ENFNLSHTGP GVVSMANAGP NTNGSQFFIC
201: TVKTPWLDQR HVVFGQVLEG MDIVRLIESQ ETDRGDRPTK KVTISDCGEL PNA

Best Arabidopsis Sequence Match ( AT5G13120.1 )
(BLAST)

001: MATLSMTLSN PKSLSAPPRR LSPINTSAFT STSFRLRTKS SFDSISFSSS TPFSASSLLL HTSYTKRNHR CFSVQSNAEV VTEPQSKITH KVYFDISVGN
101: PVGKLAGRIV IGLYGDDVPQ TVENFRALCT GEKGFGYKGS TFHRVIRDFM IQGGDFEKGN GTGGKSVYGR TFKDENFKLS HVGPGVLSMA NAGPNTNGSQ
201: FFICTIKTSW LDGRHVVFGQ VIEGMEVVKL IEEQETDRGD RPRKKVVIAD CGQLPMSEA

Arabidopsis Description

PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.