Factsheet for GSMUA_Achr2P21150_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1
endoplasmic reticulum 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P22740_001
GSMUA_Achr4P17470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13120.1	GSMUA_Achr10P...	AT4G25200.1	21798944
AT5G13120.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT5G13120.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT5G13120.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011104_P001	Maize	plastid	74.3	74.6
Zm00001d035761_P001	Maize	plastid	74.7	74.1
EES17522	Sorghum	plastid	73.9	73.9
TraesCS1A01G007500.1	Wheat	golgi	71.49	72.65
TraesCS1B01G011100.1	Wheat	plastid	71.08	72.24
TraesCS1D01G000800.2	Wheat	plastid	69.88	71.02
Os05t0103200-01	Rice	plastid	71.08	70.8
VIT_01s0146g00110.t01	Wine grape	plastid	70.68	67.18
Solyc01g009990.2.1	Tomato	plastid	66.67	66.94
KRH36359	Soybean	nucleus, plastid	67.07	66.53
KRG93128	Soybean	nucleus, plastid	66.67	65.61
PGSC0003DMT400013412	Potato	extracellular, plastid	65.06	65.32
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	69.48	63.84
CDX78508	Canola	plastid	65.06	63.28
Bra006182.1-P	Field mustard	plastid	64.66	62.65
CDX70495	Canola	plastid	64.26	62.26
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	37.75	62.25
HORVU1Hr1G000710.1	Barley	mitochondrion, plastid	69.88	61.92
AT5G13120.1	Thale cress	plastid	62.65	60.23
GSMUA_Achr10P...	Banana	endoplasmic reticulum	45.78	57.29
GSMUA_Achr7P04880_001	Banana	cytosol	44.58	57.22
GSMUA_Achr7P17320_001	Banana	endoplasmic reticulum	47.79	56.94
GSMUA_Achr2P00020_001	Banana	plastid	39.36	46.89
GSMUA_Achr1P07610_001	Banana	endoplasmic reticulum	39.36	45.37
GSMUA_Achr8P23380_001	Banana	cytosol	42.97	27.72
GSMUA_Achr5P05580_001	Banana	cytosol	43.37	27.55
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	38.96	14.29
GSMUA_Achr5P03050_001	Banana	nucleus	36.55	13.11
GSMUA_Achr2P15900_001	Banana	nucleus	38.15	11.43
GSMUA_Achr10P...	Banana	nucleus	37.35	11.18

Protein Annotations

MapMan:1.1.8.1.4.5	MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr2G21150_001	EnsemblPlants:GSMUA_Achr2P21150_001	EnsemblPlants:GSMUA_Achr2T21150_001	InterPro:IPR002130	InterPro:IPR029000	UniProt:M0S9V6
PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383
SUPFAM:SSF50891	UniParc:UPI0002963A91	SEG:seg	:	:	:

Description

peptidyl-prolyl cis-trans isomerase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr2G21150_001]

Coordinates

chr2:+:20746928..20750304

Molecular Weight (calculated)

26773.1 Da

IEP (calculated)

9.706

GRAVY (calculated)

-0.229

Length

249 amino acids

Sequence
(BLAST)

001: MAASFTSIAI VRPTAATGGS RSSGCPPLLS PSHASLGLRK SPWPRQFISP FSISPASPAK ARYAISPRAE LKEAEVQSKV TTKVYFDISI GNPVGKDVGR
101: IVIGLFGDDC PQTAENFRAL CTGEKGFGYK GSAFHRVIKD FMIQGGDFDK GNGTGGKSIY GRTFKDENFK LSHLGPGVVS MANAGPNTNG SQFFICTVKT
201: PWLDQRHVVF GQVLEGMDVV RLIESQETDR GDRPKKRVVI GDCGELPMV

Best Arabidopsis Sequence Match ( AT5G13120.2 )
(BLAST)

001: MATLSMTLSL SAPPRRLSPI NTSAFTSTSF RLRTKSSFDS ISFSSSTPFS ASSLLLHTSY TKRNHRCFSV QSNAEVVTEP QSKITHKVYF DISVGNPVGK
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA

Arabidopsis Description

PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.