Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
- extracellular 1
- endoplasmic reticulum 1
- mitochondrion 1
- golgi 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
21087465
|
plastid:
21433289
extracellular: 23159799 plasma membrane: 27800704 plastid: 27992503 extracellular: 28232208 |
gfp PMID:
21087465
doi
Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-506, Korea.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
21433289
doi
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os02t0758000-01 | |
Os06t0219500-00 | |
Os10t0362300-03 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G13120.1 | Os02t0758000-01 | AT4G25200.1 | 21798944 |
AT5G13120.1 | Os06t0219500-00 | AT4G25200.1 | 21798944 |
AT5G13120.1 | Os10t0362300-03 | AT5G35750.1 | 18642946 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EES17522 | Sorghum | plastid | 86.0 | 86.35 |
Zm00001d011104_P001 | Maize | plastid | 84.4 | 85.08 |
Zm00001d035761_P001 | Maize | plastid | 85.2 | 84.86 |
TraesCS1A01G007500.1 | Wheat | golgi | 82.4 | 84.08 |
TraesCS1B01G011100.1 | Wheat | plastid | 82.0 | 83.67 |
TraesCS1D01G000800.2 | Wheat | plastid | 81.2 | 82.86 |
HORVU1Hr1G000710.1 | Barley | mitochondrion, plastid | 80.8 | 71.89 |
GSMUA_Achr2P21150_001 | Banana | plastid | 70.8 | 71.08 |
Solyc01g009990.2.1 | Tomato | plastid | 67.6 | 68.15 |
VIT_01s0146g00110.t01 | Wine grape | plastid | 71.2 | 67.94 |
PGSC0003DMT400013412 | Potato | extracellular, plastid | 67.2 | 67.74 |
KRH36359 | Soybean | nucleus, plastid | 65.6 | 65.34 |
KRG93128 | Soybean | nucleus, plastid | 64.4 | 63.64 |
CDX78508 | Canola | plastid | 64.4 | 62.89 |
Bra006182.1-P | Field mustard | plastid | 64.4 | 62.65 |
CDX70495 | Canola | plastid | 64.0 | 62.26 |
Os02t0121300-01 | Rice | extracellular | 42.8 | 62.21 |
AT5G13120.1 | Thale cress | plastid | 63.2 | 61.0 |
GSMUA_Achr6P16580_001 | Banana | endoplasmic reticulum, mitochondrion | 65.6 | 60.52 |
Os09t0571400-01 | Rice | mitochondrion | 42.0 | 58.66 |
Os10t0154700-01 | Rice | cytosol | 41.2 | 56.91 |
Os06t0708400-01 | Rice | plasma membrane | 42.0 | 50.48 |
Os06t0708500-01 | Rice | plasma membrane, plastid | 45.2 | 50.22 |
Os09t0537600-01 | Rice | endoplasmic reticulum | 42.4 | 49.3 |
Os03t0811600-01 | Rice | nucleus, plastid | 40.0 | 49.02 |
Os06t0216800-01 | Rice | cytosol | 41.6 | 26.26 |
Os02t0761100-01 | Rice | cytosol | 40.0 | 24.81 |
Os07t0179200-01 | Rice | nucleus | 0.0 | 0.0 |
Os02t0204300-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
MapMan:1.1.8.1.4.5 | MapMan:18.12.1 | Gene3D:2.40.100.10 | EntrezGene:4337539 | ProteinID:AAS88825.1 | EMBL:AK061557 |
EMBL:AK104195 | EMBL:AK104478 | ProteinID:BAF16306.1 | ProteinID:BAS91845.1 | InterPro:Cyclophilin-like_dom_sf | InterPro:Cyclophilin-type_PPIase |
InterPro:Cyclophilin-type_PPIase_CS | InterPro:Cyclophilin-type_PPIase_dom | ProteinID:EEE62007.1 | GO:GO:0000413 | GO:GO:0003674 | GO:GO:0003755 |
GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0006457 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
GO:GO:0009533 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 |
GO:GO:0010275 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016853 | GO:GO:0019538 |
GO:GO:0031977 | GO:GO:0043424 | InterPro:IPR002130 | InterPro:IPR029000 | EnsemblPlantsGene:Os05g0103200 | EnsemblPlants:Os05t0103200-01 |
PFAM:PF00160 | PRINTS:PR00153 | ScanProsite:PS00170 | PFscan:PS50072 | PANTHER:PTHR11071 | PANTHER:PTHR11071:SF383 |
UniProt:Q75M32 | SUPFAM:SSF50891 | UniParc:UPI0000358507 | RefSeq:XP_015640756.1 | SEG:seg | : |
Description
CYCLOPHILIN 20-2Cyclophilin-like domain containing protein. (Os05t0103200-01);Cyclophilin-like domain containing protein. (Os05t0103200-02)
Coordinates
chr5:+:185654..188484
Molecular Weight (calculated)
26591.9 Da
IEP (calculated)
9.850
GRAVY (calculated)
-0.124
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVATSFATL AIARPAAERA LLASKTPSPL LSIRTGTGTA RLPSSAVFGG FTPALSAAHS RARFVSSATA DPKEVDLQSK ITNKVYFDIS IGNPVGKNVG
101: RVVIGLYGDD VPQTAENFRA LCTGEKGFGY KGSSFHRVIK DFMIQGGDFD KGNGTGGKSI YGRTFKDENF KLVHTGPGVV SMANAGPNTN GSQFFICTVK
201: TPWLDGRHVV FGQVIEGMDI VKMIESQETD RGDRPKKKVV ISECGELPVV
101: RVVIGLYGDD VPQTAENFRA LCTGEKGFGY KGSSFHRVIK DFMIQGGDFD KGNGTGGKSI YGRTFKDENF KLVHTGPGVV SMANAGPNTN GSQFFICTVK
201: TPWLDGRHVV FGQVIEGMDI VKMIESQETD RGDRPKKKVV ISECGELPVV
001: MATLSMTLSL SAPPRRLSPI NTSAFTSTSF RLRTKSSFDS ISFSSSTPFS ASSLLLHTSY TKRNHRCFSV QSNAEVVTEP QSKITHKVYF DISVGNPVGK
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA
Arabidopsis Description
PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.