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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 10
  • extracellular 1
  • endoplasmic reticulum 1
  • mitochondrion 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:endoplasmic reticulum, extracellular, golgi, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:endoplasmic reticulum, extracellular, golgi, mitochondrion, plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
plastid: 21087465
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
plastid: 27992503
extracellular: 28232208
gfp PMID: 21087465 doi
JC Ahn, DW Kim, YN You, MS Seok, JM Park, H Hwang, BG Kim, S Luan, HS Park, HS Cho
Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-506, Korea.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 23159799 doi
SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES17522 Sorghum plastid 86.0 86.35
Zm00001d011104_P001 Maize plastid 84.4 85.08
Zm00001d035761_P001 Maize plastid 85.2 84.86
TraesCS1A01G007500.1 Wheat golgi 82.4 84.08
TraesCS1B01G011100.1 Wheat plastid 82.0 83.67
TraesCS1D01G000800.2 Wheat plastid 81.2 82.86
HORVU1Hr1G000710.1 Barley mitochondrion, plastid 80.8 71.89
GSMUA_Achr2P21150_001 Banana plastid 70.8 71.08
Solyc01g009990.2.1 Tomato plastid 67.6 68.15
VIT_01s0146g00110.t01 Wine grape plastid 71.2 67.94
PGSC0003DMT400013412 Potato extracellular, plastid 67.2 67.74
KRH36359 Soybean nucleus, plastid 65.6 65.34
KRG93128 Soybean nucleus, plastid 64.4 63.64
CDX78508 Canola plastid 64.4 62.89
Bra006182.1-P Field mustard plastid 64.4 62.65
CDX70495 Canola plastid 64.0 62.26
Os02t0121300-01 Rice extracellular 42.8 62.21
AT5G13120.1 Thale cress plastid 63.2 61.0
GSMUA_Achr6P16580_001 Banana endoplasmic reticulum, mitochondrion 65.6 60.52
Os09t0571400-01 Rice mitochondrion 42.0 58.66
Os10t0154700-01 Rice cytosol 41.2 56.91
Os06t0708400-01 Rice plasma membrane 42.0 50.48
Os06t0708500-01 Rice plasma membrane, plastid 45.2 50.22
Os09t0537600-01 Rice endoplasmic reticulum 42.4 49.3
Os03t0811600-01 Rice nucleus, plastid 40.0 49.02
Os06t0216800-01 Rice cytosol 41.6 26.26
Os02t0761100-01 Rice cytosol 40.0 24.81
Os07t0179200-01 Rice nucleus 0.0 0.0
Os02t0204300-01 Rice nucleus 0.0 0.0
Protein Annotations
MapMan:1.1.8.1.4.5MapMan:18.12.1Gene3D:2.40.100.10EntrezGene:4337539ProteinID:AAS88825.1EMBL:AK061557
EMBL:AK104195EMBL:AK104478ProteinID:BAF16306.1ProteinID:BAS91845.1InterPro:Cyclophilin-like_dom_sfInterPro:Cyclophilin-type_PPIase
InterPro:Cyclophilin-type_PPIase_CSInterPro:Cyclophilin-type_PPIase_domProteinID:EEE62007.1GO:GO:0000413GO:GO:0003674GO:GO:0003755
GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006457GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009507
GO:GO:0009533GO:GO:0009534GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009987
GO:GO:0010275GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0016853GO:GO:0019538
GO:GO:0031977GO:GO:0043424InterPro:IPR002130InterPro:IPR029000EnsemblPlantsGene:Os05g0103200EnsemblPlants:Os05t0103200-01
PFAM:PF00160PRINTS:PR00153ScanProsite:PS00170PFscan:PS50072PANTHER:PTHR11071PANTHER:PTHR11071:SF383
UniProt:Q75M32SUPFAM:SSF50891UniParc:UPI0000358507RefSeq:XP_015640756.1SEG:seg:
Description
CYCLOPHILIN 20-2Cyclophilin-like domain containing protein. (Os05t0103200-01);Cyclophilin-like domain containing protein. (Os05t0103200-02)
Coordinates
chr5:+:185654..188484
Molecular Weight (calculated)
26591.9 Da
IEP (calculated)
9.850
GRAVY (calculated)
-0.124
Length
250 amino acids
Sequence
(BLAST)
001: MAVATSFATL AIARPAAERA LLASKTPSPL LSIRTGTGTA RLPSSAVFGG FTPALSAAHS RARFVSSATA DPKEVDLQSK ITNKVYFDIS IGNPVGKNVG
101: RVVIGLYGDD VPQTAENFRA LCTGEKGFGY KGSSFHRVIK DFMIQGGDFD KGNGTGGKSI YGRTFKDENF KLVHTGPGVV SMANAGPNTN GSQFFICTVK
201: TPWLDGRHVV FGQVIEGMDI VKMIESQETD RGDRPKKKVV ISECGELPVV
Best Arabidopsis Sequence Match ( AT5G13120.2 )
(BLAST)
001: MATLSMTLSL SAPPRRLSPI NTSAFTSTSF RLRTKSSFDS ISFSSSTPFS ASSLLLHTSY TKRNHRCFSV QSNAEVVTEP QSKITHKVYF DISVGNPVGK
101: LAGRIVIGLY GDDVPQTVEN FRALCTGEKG FGYKGSTFHR VIRDFMIQGG DFEKGNGTGG KSVYGRTFKD ENFKLSHVGP GVLSMANAGP NTNGSQFFIC
201: TIKTSWLDGR HVVFGQVIEG MEVVKLIEEQ ETDRGDRPRK KVVIADCGQL PMSEA
Arabidopsis Description
PNSL5Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UN74]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.