Factsheet for Os06t0708500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

plastid 1
endoplasmic reticulum 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014732_P002	Maize	mitochondrion	86.67	88.64
OQU77069	Sorghum	mitochondrion	86.22	88.18
HORVU7Hr1G095720.2	Barley	mitochondrion	83.56	86.24
TraesCS7B01G309500.2	Wheat	mitochondrion	83.56	86.24
TraesCS7A01G410100.2	Wheat	mitochondrion	83.56	86.24
VIT_06s0004g06610.t01	Wine grape	endoplasmic reticulum	76.44	86.0
TraesCS7D01G403300.2	Wheat	mitochondrion	83.11	85.78
GSMUA_Achr10P...	Banana	endoplasmic reticulum	75.11	84.92
Solyc06g076970.2.1	Tomato	nucleus	77.78	84.54
PGSC0003DMT400078234	Potato	endoplasmic reticulum	77.78	84.54
GSMUA_Achr7P17320_001	Banana	endoplasmic reticulum	75.56	81.34
HORVU6Hr1G050970.4	Barley	cytosol, endoplasmic reticulum	73.33	76.39
Os06t0708400-01	Rice	plasma membrane	67.11	72.6
Zm00001d036442_P001	Maize	mitochondrion	84.44	68.59
Os02t0121300-01	Rice	extracellular	52.0	68.02
Bra007200.1-P	Field mustard	endoplasmic reticulum	67.11	67.41
CDY27255	Canola	endoplasmic reticulum	67.11	67.41
CDX72190	Canola	endoplasmic reticulum	67.11	67.41
KRG97736	Soybean	endoplasmic reticulum	68.89	65.96
Os09t0571400-01	Rice	mitochondrion	52.0	65.36
KRH31143	Soybean	endoplasmic reticulum	68.44	64.71
AT3G55920.1	Thale cress	endoplasmic reticulum	65.33	64.47
Os09t0537600-01	Rice	endoplasmic reticulum	52.44	54.88
Os10t0154700-01	Rice	cytosol	41.33	51.38
Os03t0811600-01	Rice	nucleus, plastid	44.44	49.02
Os05t0103200-01	Rice	plastid	50.22	45.2
Os06t0216800-01	Rice	cytosol	47.11	26.77
Os02t0761100-01	Rice	cytosol	46.22	25.81
Os07t0179200-01	Rice	nucleus	0.0	0.0
Os02t0204300-01	Rice	nucleus	0.0	0.0

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	EntrezGene:4342022	EMBL:AK060865	EMBL:AK072490	ProteinID:BAD53621.1
ProteinID:BAD53622.1	ProteinID:BAD53628.1	ProteinID:BAD53629.1	ProteinID:BAF20449.1	ProteinID:BAS99434.1	ProteinID:BAS99435.1
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	EnsemblPlantsGene:Os06g0708500
EnsemblPlants:Os06t0708500-01	PFAM:PF00160	PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072
PANTHER:PTHR11071	PANTHER:PTHR11071:SF384	UniProt:Q5Z9H8	SUPFAM:SSF50891	TMHMM:TMhelix	UniParc:UPI0000446DE7
RefSeq:XP_015643304.1	RefSeq:XP_015643305.1	SEG:seg	:	:	:

Description

CYCLOPHILIN 20-1Similar to Peptidyl-prolyl cis-trans isomerase. (Os06t0708500-01);Similar to Peptidyl-prolyl cis-trans isomerase. (Os06t0708500-02)

Coordinates

chr6:+:29973898..29976258

Molecular Weight (calculated)

24069.3 Da

IEP (calculated)

10.358

GRAVY (calculated)

-0.056

Length

225 amino acids

Sequence
(BLAST)

001: MAGSGWRRIP AVRRPPMSRP ASVCLWIVLV AATLALAQVL IHLAKKSKAD LTEVTHKVYF DVEIDGKPAG RVVMGLFGKT VPKTAENFRA LCTGEKGTGK
101: SGKALHFKGS AFHRIIPSFM IQGGDFTLGD GRGGESIYGT KFADENFKIK HTGPGLLSMA NAGRDTNGSQ FFITTVTTSW LDGKHVVFGK VLSGMDVVYK
201: IEAEGQQSGS PKSKVVIADS GELPM

Best Arabidopsis Sequence Match ( AT5G58710.1 )
(BLAST)

001: MASSVTLLLW SLLLLGTLSA IQAKKSKENL KEITHKVYFD VEIDGKAAGR IVMGLFGKTV PKTVENFRAL CTGEKGIGKN GKALHYKGSS FHRIIPSFML
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL

Arabidopsis Description

CYP20-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UBF4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.