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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 5
  • golgi 5
  • plasma membrane 5
  • endoplasmic reticulum 9
  • vacuole 6
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:endoplasmic reticulum
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:endoplasmic reticulum
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400078234 Potato endoplasmic reticulum 97.58 97.58
VIT_06s0004g06610.t01 Wine grape endoplasmic reticulum 86.47 89.5
GSMUA_Achr10P... Banana endoplasmic reticulum 79.23 82.41
GSMUA_Achr7P17320_001 Banana endoplasmic reticulum 81.16 80.38
Zm00001d014732_P002 Maize mitochondrion 83.09 78.18
Os06t0708500-01 Rice plasma membrane, plastid 84.54 77.78
HORVU7Hr1G095720.2 Barley mitochondrion 81.16 77.06
TraesCS7B01G309500.2 Wheat mitochondrion 81.16 77.06
TraesCS7A01G410100.2 Wheat mitochondrion 81.16 77.06
OQU77069 Sorghum mitochondrion 81.64 76.82
TraesCS7D01G403300.2 Wheat mitochondrion 80.68 76.61
HORVU6Hr1G050970.4 Barley cytosol, endoplasmic reticulum 78.26 75.0
Solyc06g051650.2.1 Tomato endoplasmic reticulum 75.85 69.78
Solyc01g111170.2.1 Tomato extracellular, nucleus 57.0 69.01
Solyc11g006070.1.1 Tomato cytosol, extracellular, unclear 50.72 68.63
Solyc10g054910.1.1 Tomato extracellular, unclear 56.04 67.44
Zm00001d036442_P001 Maize mitochondrion 82.61 61.73
Solyc01g096520.2.1 Tomato cytosol, nucleus, plastid 46.86 51.05
Solyc01g111360.2.1 Tomato endoplasmic reticulum 53.62 48.68
Solyc01g009990.2.1 Tomato plastid 53.62 44.76
Solyc01g108340.2.1 Tomato cytosol 49.28 28.18
Solyc02g090480.2.1 Tomato cytosol 44.93 25.76
Solyc09g065720.2.1 Tomato nucleus 51.69 16.21
Solyc08g067090.2.1 Tomato nucleus 42.03 10.75
Protein Annotations
MapMan:18.12.1Gene3D:2.40.100.10InterPro:Cyclophilin-like_dom_sfInterPro:Cyclophilin-type_PPIaseInterPro:Cyclophilin-type_PPIase_CSInterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413GO:GO:0003674GO:GO:0003755GO:GO:0003824GO:GO:0006457GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016853GO:GO:0019538InterPro:IPR002130
InterPro:IPR029000UniProt:K4CA55PFAM:PF00160PIRSF:PIRSF001467PRINTS:PR00153ScanProsite:PS00170
PFscan:PS50072PANTHER:PTHR11071PANTHER:PTHR11071:SF384SUPFAM:SSF50891SignalP:SignalP-noTMEnsemblPlantsGene:Solyc06g076970.2
EnsemblPlants:Solyc06g076970.2.1UniParc:UPI000276558ESEG:seg:::
Description
Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:K4CA55]
Coordinates
chr6:-:47833488..47837300
Molecular Weight (calculated)
22250.9 Da
IEP (calculated)
9.701
GRAVY (calculated)
-0.119
Length
207 amino acids
Sequence
(BLAST)
001: MAATRFQPSI FLLCSLVVIG TLALAQAKSQ ENLKEVTHKV YFDVEIDGKP AGRIVMGLFG KTVPKTAENF RALCTGEKGV GKSGKPLHFK GSKFHRIIPS
101: FMIQGGDFTL GDGRGGESIY GEKFADENFK IKHTGPGLLS MANAGSDTNG SQFFITTVTT TWLDGRHVVF GKVLSGMDVV YKMEAEGRQS GTPKSKVTIA
201: DSGELPL
Best Arabidopsis Sequence Match ( AT2G29960.1 )
(BLAST)
001: MAKASFILLG TLFLFGAIAS IQAKEDLKEV THKVYFDVEI DGKSAGRVVI GLFGKAVPKT AENFRALCTG EKGVGKSGKP LHYKGSKFHR IIPSFMIQGG
101: DFTHGNGMGG ESIYGQKFAD ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE GKQSGTPKSK VVIADSGELP
201: L
Arabidopsis Description
CYP19-4Peptidyl-prolyl cis-trans isomerase CYP19-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDP4]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.