Factsheet for GSMUA_Achr10P06300_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 5
endoplasmic reticulum 9
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P17320_001	Banana	endoplasmic reticulum	84.92	80.86
VIT_06s0004g06610.t01	Wine grape	endoplasmic reticulum	80.4	80.0
Solyc06g076970.2.1	Tomato	nucleus	82.41	79.23
PGSC0003DMT400078234	Potato	endoplasmic reticulum	81.91	78.74
HORVU7Hr1G095720.2	Barley	mitochondrion	82.91	75.69
TraesCS7B01G309500.2	Wheat	mitochondrion	82.91	75.69
TraesCS7A01G410100.2	Wheat	mitochondrion	82.91	75.69
TraesCS7D01G403300.2	Wheat	mitochondrion	82.41	75.23
Os06t0708500-01	Rice	plasma membrane, plastid	84.92	75.11
Zm00001d014732_P002	Maize	mitochondrion	82.41	74.55
OQU77069	Sorghum	mitochondrion	81.91	74.09
HORVU6Hr1G050970.4	Barley	cytosol, endoplasmic reticulum	78.39	72.22
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	52.76	69.54
GSMUA_Achr7P04880_001	Banana	cytosol	65.83	67.53
Bra007200.1-P	Field mustard	endoplasmic reticulum	70.85	62.95
CDY27255	Canola	endoplasmic reticulum	70.85	62.95
KRG97736	Soybean	endoplasmic reticulum	73.87	62.55
CDX72190	Canola	endoplasmic reticulum	70.35	62.5
KRH31143	Soybean	endoplasmic reticulum	73.37	61.34
AT3G55920.1	Thale cress	endoplasmic reticulum	69.35	60.53
Zm00001d036442_P001	Maize	mitochondrion	82.91	59.57
GSMUA_Achr1P07610_001	Banana	endoplasmic reticulum	53.77	49.54
GSMUA_Achr2P00020_001	Banana	plastid	48.74	46.41
GSMUA_Achr2P21150_001	Banana	plastid	57.29	45.78
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	56.78	41.7
GSMUA_Achr5P05580_001	Banana	cytosol	56.28	28.57
GSMUA_Achr8P23380_001	Banana	cytosol	55.28	28.5
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	50.75	14.87
GSMUA_Achr5P03050_001	Banana	nucleus	49.25	14.12
GSMUA_Achr10P...	Banana	nucleus	49.25	11.78
GSMUA_Achr2P15900_001	Banana	nucleus	48.74	11.67

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr10G06300_001
EnsemblPlants:GSMUA_Achr10P06300_001	EnsemblPlants:GSMUA_Achr10T06300_001	InterPro:IPR002130	InterPro:IPR029000	UniProt:M0RFV7	PFAM:PF00160
PIRSF:PIRSF001467	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF384
SUPFAM:SSF50891	SignalP:SignalP-noTM	UniParc:UPI00029494C6	SEG:seg	:	:

Description

Peptidyl-prolyl cis-trans isomerase CYP20-1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G06300_001]

Coordinates

chr10:-:16716273..16719233

Molecular Weight (calculated)

21348.9 Da

IEP (calculated)

9.702

GRAVY (calculated)

-0.032

Length

199 amino acids

Sequence
(BLAST)

001: MRCFLLLIVA IILVLVQAKE SKGSSKEVSH KVYFDVEIGG KPAGRIVMGL FGKTVPKTAE NFRALCTGEK GVGKSGKALH FKGSTFHRII PSFMIQGGDF
101: THGDGRGGES IYGMTFADEN FKLKHTGPGF LSMANAGRDT NGSQFFITTV TTSWLDGKHV VFGKVLSGMD VVYKIEAEGK QNGSPKSEVV IADSGELPL

Best Arabidopsis Sequence Match ( AT5G58710.1 )
(BLAST)

001: MASSVTLLLW SLLLLGTLSA IQAKKSKENL KEITHKVYFD VEIDGKAAGR IVMGLFGKTV PKTVENFRAL CTGEKGIGKN GKALHYKGSS FHRIIPSFML
101: QGGDFTHGNG MGGESIYGEK FADENFKLKH TGPGFLSMAN AGQDTNGSQF FITTVTTSWL DGRHVVFGKV VTGMDVVYKV EAEGNQSGTP KSKVVIVDSG
201: ELPL

Arabidopsis Description

CYP20-1Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:A0A178UBF4]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.