Factsheet for GSMUA_Achr9P28600_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, golgi, plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

nucleus 3
cytosol 2
extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	79.53	64.9
GSMUA_Achr3P12630_001	Banana	plasma membrane, unclear	14.14	63.58
GSMUA_Achr2P15900_001	Banana	nucleus	75.41	61.61
GSMUA_Achr10P...	Banana	endoplasmic reticulum	14.87	50.75
GSMUA_Achr7P17320_001	Banana	endoplasmic reticulum	15.46	50.24
GSMUA_Achr7P04880_001	Banana	cytosol	13.7	47.94
GSMUA_Achr2P00020_001	Banana	plastid	14.29	46.41
VIT_04s0008g05090.t01	Wine grape	nucleus	53.31	45.48
GSMUA_Achr1P07610_001	Banana	endoplasmic reticulum	13.55	42.59
TraesCS6A01G176900.1	Wheat	nucleus	50.96	42.04
HORVU6Hr1G037500.21	Barley	nucleus	50.96	42.04
GSMUA_Achr5P03050_001	Banana	nucleus	42.71	41.79
TraesCS6B01G208900.2	Wheat	cytosol	51.25	40.99
Solyc08g067090.2.1	Tomato	nucleus	48.6	40.79
TraesCS6D01G167200.3	Wheat	cytosol	50.81	40.64
OQU84603	Sorghum	nucleus	49.78	40.62
KRH52477	Soybean	nucleus	50.07	40.0
KRH61803	Soybean	nucleus	49.34	39.74
Zm00001d053620_P016	Maize	nucleus	47.28	39.19
GSMUA_Achr2P21150_001	Banana	plastid	14.29	38.96
CDX68845	Canola	nucleus	43.45	38.56
CDX75243	Canola	nucleus	43.3	38.43
Zm00001d015729_P005	Maize	nucleus	48.16	38.07
Bra011346.1-P	Field mustard	nucleus	43.0	37.82
PGSC0003DMT400059575	Potato	nucleus	38.44	37.39
GSMUA_Achr6P16580_001	Banana	endoplasmic reticulum, mitochondrion	14.58	36.53
AT4G32420.6	Thale cress	nucleus	44.62	36.2
KRH15996	Soybean	nucleus	43.59	34.86
GSMUA_Achr8P23380_001	Banana	cytosol	19.29	33.94
GSMUA_Achr5P05580_001	Banana	cytosol	19.15	33.16

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom
GO:GO:0000413	GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G28600_001
EnsemblPlants:GSMUA_Achr9P28600_001	EnsemblPlants:GSMUA_Achr9T28600_001	InterPro:IPR002130	InterPro:IPR029000	UniProt:M0U4B7	PFAM:PF00160
PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF255	SUPFAM:SSF50891
UniParc:UPI000296CD3E	SEG:seg	:	:	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_179.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr9G28600_001]

Coordinates

chr9:-:32518201..32533615

Molecular Weight (calculated)

76111.9 Da

IEP (calculated)

11.584

GRAVY (calculated)

-1.287

Length

679 amino acids

Sequence
(BLAST)

001: MAKRNPIVFL DVAIDGNAAG RLMFELFADI VPKTAENFRA LCTGEMGFGP MTKKPLHYKG SIFHRIIKGF MAQGGDFSRR DGTGGESIYG GKFADENFVL
101: NHDGPGLLSM ANAGRDTNGS QFFITFKPAP HLDGKHVVFG KLILGHETLK NIESVDVDGD RPVVPVKIVN CGELNESAAA LHENDKKKNF KLKKVRDVSS
201: DDGHEGRRCG RHKKPSSKGK RKKKRRRYSS ESDSSSDTES ESSETDSDSD SFTSSTSDVS SSNDDRRHRR KKYSRRDKYK HGKRKRDRRR EKRRKRRDRK
301: SRHKAKRMSE SDSEMGSTNG SSSDDDGNHK RRAQKSKVPS HVSDEKKSQL PVERETIAIF LDKGDITEKL PGDGAKYHRE NGEIQSNGIT ASKSVRDVDE
401: LPNLEANLNK SRSHSMSLNQ SMSKSMSISP RRSPSESRTK SPVKVHSRSV SGSSRRSPSR SPVRARRSPV RRAISPPSNH RRSLSRSASP DGSPKRIRRG
501: RGFSQQYSYA RRYRTPSPDR SPIRLHRYGG RSDRDRYSSY RSYHNRSPPR RYRSPPRGRT PPRYRGRRSR TRSVSRSPVG YRGRARGGHS MSPARSRSPA
601: SEKLRSHGAR DSIRTEKRGS VSRSRSPSGS RSRSQSRSSH DTRSPKPVSK EQSRSPSSSS GGKKGLVSYG DVSPDFGGK

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.