Factsheet for VIT_04s0008g05090.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g067090.2.1	Tomato	nucleus	65.08	64.03
PGSC0003DMT400059575	Potato	nucleus	54.65	62.32
KRH61803	Soybean	nucleus	64.32	60.74
KRH52477	Soybean	nucleus	64.45	60.35
VIT_03s0038g01930.t01	Wine grape	cytosol	12.56	58.14
VIT_14s0081g00700.t01	Wine grape	cytosol	12.31	56.32
CDX68845	Canola	nucleus	54.02	56.21
VIT_18s0001g14400.t01	Wine grape	extracellular	12.06	55.81
Bra011346.1-P	Field mustard	nucleus	53.89	55.57
CDX75243	Canola	nucleus	53.39	55.56
GSMUA_Achr9P28600_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	45.48	53.31
AT4G32420.6	Thale cress	nucleus	55.53	52.81
KRH15996	Soybean	nucleus	53.27	49.94
HORVU6Hr1G037500.21	Barley	nucleus	49.87	48.24
TraesCS6A01G176900.1	Wheat	nucleus	49.87	48.24
OQU84603	Sorghum	nucleus	50.38	48.2
VIT_06s0004g06610.t01	Wine grape	endoplasmic reticulum	12.06	48.0
Zm00001d053620_P016	Maize	nucleus	48.74	47.37
TraesCS6D01G167200.3	Wheat	cytosol	50.0	46.88
TraesCS6B01G208900.2	Wheat	cytosol	49.87	46.76
GSMUA_Achr10P...	Banana	nucleus	48.12	46.03
Zm00001d015729_P005	Maize	nucleus	49.5	45.87
VIT_13s0084g00620.t01	Wine grape	cytosol	10.8	45.5
GSMUA_Achr2P15900_001	Banana	nucleus	47.36	45.37
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	40.33	44.15
VIT_13s0067g00870.t01	Wine grape	endoplasmic reticulum	11.93	41.67
VIT_03s0038g02200.t01	Wine grape	endoplasmic reticulum	11.18	39.91
VIT_07s0005g02410.t01	Wine grape	plastid	10.8	33.99
VIT_03s0063g01030.t01	Wine grape	cytosol	15.2	33.52
VIT_01s0146g00110.t01	Wine grape	plastid	10.55	32.06

Protein Annotations

EntrezGene:100264514	wikigene:100264514	MapMan:18.12.1	Gene3D:2.40.100.10	ProteinID:CCB46780	ProteinID:CCB46780.1
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_dom	UniProt:F6H3U3	EMBL:FN595231	GO:GO:0000413
GO:GO:0003674	GO:GO:0003755	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	EntrezGene:LOC100264514
wikigene:LOC100264514	PFAM:PF00160	PRINTS:PR00153	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF255
SUPFAM:SSF50891	TIGR:TC52681	TIGR:TC62945	TIGR:TC65376	UniParc:UPI00021089DB	ArrayExpress:VIT_04s0008g05090
EnsemblPlantsGene:VIT_04s0008g05090	EnsemblPlants:VIT_04s0008g05090.t01	RefSeq:XP_002285000	RefSeq:XP_002285000.2	RefSeq:XP_010648637.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:4564524..4576677

Molecular Weight (calculated)

89724.6 Da

IEP (calculated)

11.940

GRAVY (calculated)

-1.426

Length

796 amino acids

Sequence
(BLAST)

001: MTKKKNPLVY LDVSIDGDPI ERMVFELFSD VAPKTAENFR ALCTGEKGIG PKTGKPLHYK GSFFHRIIKG SMVQGGDFLR RDGSGGESIY GGKFPDESPR
101: LKHDGPGLLS MSVADRDTVG SQFIVTFSAN HHLDRKYVVF GKLVQGHEVL KRIESVGDEE GIPTATVKII YCGEIPEEKR KSIKSKIGKD ASSDANSHEV
201: RRREKHKRSS KERRKKRRRY DTSESESLSD TDTESSESDS DSDSESSSYI SSSSEDRRKK RKRSKRDKYR RGKRRDKRRD KKRKRRDKKS KRRSKRSSDS
301: LTDEDSNGKS GSSSADDGTD VRGPDCNPKK PPQLIAGNGS PVVEDREAVS TRHKKGEVAD VLEKEEGESP KENGDRRSNG IEEVKSDRSA ERQPDVVDDH
401: PGKSRSRSMS PKRTMSKSMS ISPRRSLSKS PSVSRSQSVS RSTPRPPRSR TVSRSPSVSR RAPLRSRTVS RSPAPARSDS SGSPARSLSR SPVKVSRGRS
501: FSRSPVRTRT RRSISRSPVR SLSRRSPSRS PPRTSSRKSV SRSPVRISKS GVSRSPIKSS RRSISRSSGR APSRKSVSRS PNRVPSRNNR RSYSRSPASS
601: GRRARSPASD RSRTVSRSPS PDGSPKRIRR GRGFSERYSY ARRYRTPSPD RSPVRSYRYN NRIDRDRYPY RRYDRSPRRY RSPPRGRTPP RYRGRRSRTR
701: SPSASRSPIR YRKRRYSRSP VRSRSPVEPS RYRVSPRPEK RRSPSRSRSP SASRSSLDSQ SPKKASKDES RSSSESPSGK KGLVSYGDGS PDSGQR

Best Arabidopsis Sequence Match ( AT3G63400.1 )
(BLAST)

001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD

Arabidopsis Description

CYP63Peptidyl-prolyl cis-trans isomerase CYP63 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY75]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.