Factsheet for VIT_07s0005g02410.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11
extracellular 1
endoplasmic reticulum 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96627	Soybean	nucleus, plastid	69.57	67.69
EES00602	Sorghum	plastid	63.24	66.12
KRH33684	Soybean	nucleus, plastid	64.43	61.98
TraesCS3D01G159000.1	Wheat	plastid	58.5	61.67
CDX76611	Canola	plastid	61.66	61.66
HORVU3Hr1G030750.1	Barley	plastid	58.1	61.25
TraesCS3A01G151100.1	Wheat	plastid	58.1	61.25
TraesCS3B01G178000.1	Wheat	plastid	58.1	61.25
VIT_18s0001g14400.t01	Wine grape	extracellular	41.5	61.05
VIT_03s0038g01930.t01	Wine grape	cytosol	41.5	61.05
CDX93994	Canola	plastid	62.45	60.54
CDY11395	Canola	plastid	61.66	60.47
VIT_14s0081g00700.t01	Wine grape	cytosol	41.5	60.34
Bra007655.1-P	Field mustard	plastid	61.26	60.31
KRH68358	Soybean	plastid	56.13	60.17
CDY58761	Canola	plastid	61.26	60.08
Bra014414.1-P	Field mustard	plastid	60.47	59.3
VIT_06s0004g06610.t01	Wine grape	endoplasmic reticulum	44.27	56.0
VIT_13s0084g00620.t01	Wine grape	cytosol	40.71	54.5
Zm00001d008209_P001	Maize	plastid	60.47	54.45
VIT_01s0146g00110.t01	Wine grape	plastid	55.73	53.82
AT3G62030.2	Thale cress	endoplasmic reticulum	63.24	51.12
VIT_13s0067g00870.t01	Wine grape	endoplasmic reticulum	43.48	48.25
VIT_03s0038g02200.t01	Wine grape	endoplasmic reticulum	41.11	46.64
VIT_03s0063g01030.t01	Wine grape	cytosol	38.34	26.87
VIT_00s0179g00290.t01	Wine grape	endoplasmic reticulum, golgi	40.32	14.03
VIT_04s0008g05090.t01	Wine grape	nucleus	33.99	10.8

Protein Annotations

EntrezGene:100250386	wikigene:100250386	MapMan:18.12.1	Gene3D:2.40.100.10	EMBL:AM451537	ProteinID:CAN69876
ProteinID:CAN69876.1	ProteinID:CBI37036	ProteinID:CBI37036.3	InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS
InterPro:Cyclophilin-type_PPIase_dom	UniProt:D7U2S0	EMBL:FN596502	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016853	GO:GO:0019538	InterPro:IPR002130	InterPro:IPR029000	EntrezGene:LOC100250386	wikigene:LOC100250386
PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383
SUPFAM:SSF50891	TIGR:TC56733	TIGR:TC66255	UniParc:UPI0001BE4789	ArrayExpress:VIT_07s0005g02410	EnsemblPlantsGene:VIT_07s0005g02410
EnsemblPlants:VIT_07s0005g02410.t01	RefSeq:XP_002273421	RefSeq:XP_002273421.2	RefSeq:XP_003632419	RefSeq:XP_003632419.1	SEG:seg

Description

Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:D7U2S0]

Coordinates

chr7:+:4770464..4773528

Molecular Weight (calculated)

27398.9 Da

IEP (calculated)

7.870

GRAVY (calculated)

-0.048

Length

253 amino acids

Sequence
(BLAST)

001: MASAFSSCSV FQAVFSKDIP SLPRRPVVSC IGKTPTLSCH GRGLASKSHY ASCFSITPLS KVNSAGHRRL MCVNSMANEV ELQAKVTTKC FFDVDIGGEP
101: VGRIVIGLFG EVVPKTAENF RVLCTGEKGY GYKGCSFHRI IKDFMIQGGD FTEGDGTGGI SIYGSSFEDE NFALTHVGPG VLSMANAGPN TNGSQFFICT
201: VKTPWLDRRH VVFGHVIDGM DVVRKLESQE TSRSDYPKLT CRIINCGELP MDS

Best Arabidopsis Sequence Match ( AT3G62030.3 )
(BLAST)

001: MASSSSMQMV HTSRSIAQIG FGVKSQLVSA NRTTQSVCFG ARSSGIALSS RLHYASPIKQ FSGVYATTKH QRTACVKSMA AEEEVIEPQA KVTNKVYFDV
101: EIGGEVAGRI VMGLFGEVVP KTVENFRALC TGEKKYGYKG SSFHRIIKDF MIQGGDFTEG NGTGGISIYG AKFEDENFTL KHTGPGILSM ANAGPNTNGS
201: QFFICTVKTS WLDNKHVVFG QVIEGMKLVR TLESQETRAF DVPKKGCRIY ACGELPLDA

Arabidopsis Description

ROC4Rotamase CYP 4 [Source:UniProtKB/TrEMBL;Acc:F4IX26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.