CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58761	Canola	plastid	95.02	96.12
CDX76611	Canola	plastid	85.44	88.14
CDY11395	Canola	plastid	84.67	85.66
AT3G62030.2	Thale cress	endoplasmic reticulum	86.59	72.2
CDY47469	Canola	cytosol	43.3	66.08
CDY26779	Canola	cytosol	42.91	65.5
CDX72741	Canola	cytosol	42.91	65.12
CDY22414	Canola	cytosol, extracellular	42.91	65.12
CDY12100	Canola	cytosol	42.53	64.53
CDX90292	Canola	cytosol	42.53	64.53
VIT_07s0005g02410.t01	Wine grape	plastid	60.54	62.45
EES00602	Sorghum	plastid	57.09	61.57
CDX69094	Canola	cytosol	40.23	61.05
CDY27248	Canola	cytosol	42.53	60.99
CDX72175	Canola	cytosol	42.15	60.11
CDY61026	Canola	endoplasmic reticulum	45.98	59.7
CDX71155	Canola	endoplasmic reticulum	45.59	59.2
KRG96627	Soybean	nucleus, plastid	58.62	58.85
CDX80340	Canola	endoplasmic reticulum	45.59	58.33
TraesCS3B01G178000.1	Wheat	plastid	53.64	58.33
CDY52123	Canola	endoplasmic reticulum	45.59	58.33
TraesCS3D01G159000.1	Wheat	plastid	53.64	58.33
CDY55458	Canola	endoplasmic reticulum	44.44	57.71
CDY58941	Canola	endoplasmic reticulum	44.44	57.71
TraesCS3A01G151100.1	Wheat	plastid	52.87	57.5
HORVU3Hr1G030750.1	Barley	plastid	51.72	56.25
KRH33684	Soybean	nucleus, plastid	56.32	55.89
KRH68358	Soybean	plastid	48.66	53.81
CDX78508	Canola	plastid	52.11	53.12
CDX70495	Canola	plastid	52.11	52.92
Zm00001d008209_P001	Maize	plastid	55.94	51.96
CDX72190	Canola	endoplasmic reticulum	43.3	50.45
CDY27255	Canola	endoplasmic reticulum	42.91	50.0
CDX91486	Canola	cytosol	37.55	49.0
CDX74892	Canola	cytosol, plastid	37.55	48.04
CDX93307	Canola	plastid	37.55	47.8
CDY18371	Canola	cytosol, plastid	37.55	47.34
CDX75476	Canola	endoplasmic reticulum	38.7	45.09
CDX69100	Canola	endoplasmic reticulum	38.7	45.09
CDX76307	Canola	endoplasmic reticulum	37.93	44.39
CDY17501	Canola	endoplasmic reticulum	37.55	43.56
CDY36653	Canola	cytosol	37.93	27.42
CDX71247	Canola	cytosol	37.93	27.42
CDY53714	Canola	nucleus	37.16	17.45
CDX93909	Canola	nucleus	37.16	15.85
CDX68845	Canola	nucleus	30.65	10.46
CDX75243	Canola	nucleus	30.27	10.33

Protein Annotations

MapMan:18.12.1	Gene3D:2.40.100.10	GO:A0A078DZZ5	EnsemblPlants:CDX93994	ProteinID:CDX93994	ProteinID:CDX93994.1
InterPro:Cyclophilin-like_dom_sf	InterPro:Cyclophilin-type_PPIase	InterPro:Cyclophilin-type_PPIase_CS	InterPro:Cyclophilin-type_PPIase_dom	GO:GO:0000413	GO:GO:0003674
GO:GO:0003755	GO:GO:0003824	GO:GO:0006457	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00156856001	InterPro:IPR002130	InterPro:IPR029000
PFAM:PF00160	PRINTS:PR00153	ScanProsite:PS00170	PFscan:PS50072	PANTHER:PTHR11071	PANTHER:PTHR11071:SF383
SUPFAM:SSF50891	UniParc:UPI000189D7C5	SEG:seg	:	:	:

Description

BnaC04g21530D

Coordinates

chrLK031878:-:1231898..1233583

Molecular Weight (calculated)

28611.3 Da

IEP (calculated)

8.935

GRAVY (calculated)

-0.250

Length

261 amino acids

Sequence
(BLAST)

001: MASSSPSQMV HTSRTISQIR VRSQLVSANL TPQSLRFGTR SSGFSLSSRL HYATSFPLKT ISGAYKLQRT ACVKSMAAEE EEEEEVLAPP QAKVTHKVYF
101: DVEIGGEVAG RIVMGLFGDV VPKTVENFRA LCTGEKKYGY KGSSFHRIIK DFMIQGGDFT EGNGTGGISI YGAKFEDENF TLKHTGPGIL SMANAGPNTN
201: GSQFFICTIK TSWLDNKHVV FGQVIEGMKL VRRLESQETR AMDVPKKACR IYACGELPMD A

Best Arabidopsis Sequence Match ( AT3G62030.1 )
(BLAST)

001: MASSSSMQMV HTSRSIAQIG FGVKSQLVSA NRTTQSVCFG ARSSGIALSS RLHYASPIKQ FSGVYATTKH QRTACVKSMA AEEEEVIEPQ AKVTNKVYFD
101: VEIGGEVAGR IVMGLFGEVV PKTVENFRAL CTGEKKYGYK GSSFHRIIKD FMIQGGDFTE GNGTGGISIY GAKFEDENFT LKHTGPGILS MANAGPNTNG
201: SQFFICTVKT SWLDNKHVVF GQVIEGMKLV RTLESQETRA FDVPKKGCRI YACGELPLDA

Arabidopsis Description

ROC4Rotamase CYP 4 [Source:UniProtKB/TrEMBL;Acc:F4IX26]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.